RetrogeneDB ID:

retro_tsyr_794

Retrocopy
location
Organism:Tarsier (Tarsius syrichta)
Coordinates:scaffold_202364:2064..2527(-)
Located in intron of:None
Retrocopy
information
Ensembl ID:None
Aliases:None
Status:NOVEL
Parental gene
information
Parental gene summary:
Parental gene symbol:ARPC3
Ensembl ID:ENSTSYG00000002953
Aliases:None
Description:actin related protein 2/3 complex, subunit 3, 21kDa [Source:HGNC Symbol;Acc:706]


Retrocopy-Parental alignment summary:






>retro_tsyr_794
GCTTACCACTCTTCTCTCATGGACCCTGACCCCAAGCTCATCGGGAACATGGCACTGTTATCTATCAGAAACCAGTTCAA
AGAACCTGCCCCTAGAGAGACAAAAGATACAGACATTGAGCATGAAGCCATCTCTTCTTTAAGGCCAATGTCTTCTTCAA
AAACTATGAACCAAGAAGGATGATAATAGGACCTTGATGTATATGACACTCTACATTTCTGAGTGTATAAAGAGACTCCA
AAAGTGCAATTCCAAAAGTCAAGGTGAAAAAAATTTATACATTGGGAATCACTAATTTTCCCATTCCTGGAGAACTGGTT
TTCCACTCCATGCAATGTATGCCAAGCCTGCAAACACATAGGAAGAAGAAGTGATGAGAACCTACTTACAACAGCTAAGG
CAAGAAACTAGACTGAGACTTTGTGAGAAAGTTACTGACTCTCAGAATGATAAACCCCGCAAA

ORF - retro_tsyr_794 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: 77.5 %
Parental protein coverage: 100. %
Number of stop codons detected: 1
Number of frameshifts detected 4


Retrocopy - Parental Gene Alignment:

ParentalAYHSSLMDPDTKLIGNMALLPIRSQFKGPAPRETKDTDIVDEAI-YYFKANVFFKNYE-IKNEADRTLIY
AYHSSLMDPD.KLIGNMALL.IR.QFK.PAPRETKDTDI..EAI...FKANVFFKNYE..K....RTL.Y
RetrocopyAYHSSLMDPDPKLIGNMALLSIRNQFKEPAPRETKDTDIEHEAI<LFFKANVFFKNYE<TKKDDNRTLMY
ParentalITLYISECLKKLQKCNSKSQGEKEMYTLG-ITNFPIPGE-PGFPLNAIYAKPANKQEDEVMRGYLQQLRQ
.TLYISEC.K.LQKCNSKSQGEK..Y..G.ITNFPIPGE..GFPL.A.YAKPAN..E.EVMR.YLQQLRQ
RetrocopyMTLYISECIKRLQKCNSKSQGEKNLY-IG>ITNFPIPGE<TGFPLHAMYAKPANT*EEEVMRTYLQQLRQ
ParentalETGLRLCEKVFDPQNDKPSK
ET.LRLCEKV.D.QNDKP.K
RetrocopyETRLRLCEKVTDSQNDKPRK

Legend:
*Stop codon
>Forward frameshift by one nucleotide
<Reverse frameshift by one nucleotide






Tarsius syrichta was not studied using RNA-Seq expression data.
Tarsius syrichta was not studied using ChIP-Seq data.
Tarsius syrichta was not studied using EST data.
Tarsius syrichta was not studied using FANTOM5 data.
retro_tsyr_794 was not experimentally validated.

Retrocopy orthology:
Tarsius syrichta does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

Parental genes homology:
Parental genes homology involve 20 parental genes, and 42 retrocopies.

Species Parental gene accession Retrocopies number
Canis familiaris ENSCAFG000000084561 retrocopy
Callithrix jacchus ENSCJAG000000093601 retrocopy
Dasypus novemcinctus ENSDNOG000000049872 retrocopies
Dipodomys ordii ENSDORG000000082121 retrocopy
Erinaceus europaeus ENSEEUG000000115312 retrocopies
Felis catus ENSFCAG000000041322 retrocopies
Loxodonta africana ENSLAFG000000061663 retrocopies
Macaca mulatta ENSMMUG000000064923 retrocopies
Monodelphis domestica ENSMODG000000116281 retrocopy
Nomascus leucogenys ENSNLEG000000028024 retrocopies
Oryctolagus cuniculus ENSOCUG000000119081 retrocopy
Otolemur garnettii ENSOGAG000000134241 retrocopy
Oreochromis niloticus ENSONIG000000037851 retrocopy
Procavia capensis ENSPCAG000000118582 retrocopies
Pongo abelii ENSPPYG000000049476 retrocopies
Sarcophilus harrisii ENSSHAG000000148053 retrocopies
Tupaia belangeri ENSTBEG000000112191 retrocopy
Tarsius syrichta ENSTSYG00000002953 4 retrocopies
Tursiops truncatus ENSTTRG000000150832 retrocopies
Vicugna pacos ENSVPAG000000084041 retrocopy



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