Parental gene:

ARPC3, ENSPPYG00000004947

Aliases:None
Description:actin related protein 2/3 complex, subunit 3, 21kDa [Source:HGNC Symbol;Acc:706]
Organism:Orangutan (Pongo abelii)
Coordinates:12:112222317..112237583(-)


>ENSPPYG00000004947
ATGCCGGCTTACCACTCTTCTCTCATGGATCCTGACACCAAACTCATCGGAAACATGGCACTGTTGCCTATCAGAAGTCA
ATTCAAAGGACCTGCCCCCAGAGAGACAAAAGATACAGATATTGTGGATGAAGCCATCTATTACTTCAAGGCCAATGTCT
TCTTCAAAAACTATGAAATTAAGAATGAAGCTGATAGGACCTTGATATATATAACTCTCTACATTTCTGAATGTCTGAAG
AAACTCCAAAAGTGCAATTCCAAAAGCCAAGGTGAGAAAGAAATGTATACACTGGGAATCACTAATTTTCCCATTCCTGG
AGAGCCTGGTTTTCCACTTAACGCAATTTATGCCAAACCTGCAAACAAACAGGAAGATGAAGTGATGAGAGCCTATTTAC
AACAGCTAAGGCAAGAGACTGGACTGAGACTTTGTGAGAAAGTTTTCGACCCTCAGAATGATAAACCCAGCAAGGTAAGA
CCCTCTTCTTGCCTGCTTAATTGGTAA

Library Parental gene expression (RPM)
SRP007412_brain_prefrontal_cortex 14 .76 RPM
SRP007412_cerebellum 12 .40 RPM
SRP007412_heart 6 .35 RPM
SRP007412_kidney 16 .81 RPM
SRP007412_liver 17 .44 RPM



Species Parental gene accession Homology type Retrogenes number
Canis familiaris ENSCAFG00000008456 ortholog_one2one 1 retrogene
retro_cfam_11,
Callithrix jacchus ENSCJAG00000009360 possible_ortholog 1 retrogene
retro_cjac_242,
Dasypus novemcinctus ENSDNOG00000004987 ortholog_one2one 2 retrogenes
retro_dnov_2619, retro_dnov_685,
Dipodomys ordii ENSDORG00000008212 ortholog_one2one 1 retrogene
retro_dord_312,
Erinaceus europaeus ENSEEUG00000011531 ortholog_one2one 2 retrogenes
retro_eeur_122, retro_eeur_99,
Felis catus ENSFCAG00000004132 ortholog_one2many 2 retrogenes
retro_fcat_1048, retro_fcat_73,
Loxodonta africana ENSLAFG00000006166 ortholog_one2one 3 retrogenes
retro_lafr_1119, retro_lafr_763, retro_lafr_840,
Macaca mulatta ENSMMUG00000006492 possible_ortholog 3 retrogenes
retro_mmul_1105, retro_mmul_1174, retro_mmul_543,
Monodelphis domestica ENSMODG00000011628 ortholog_one2many 1 retrogene
retro_mdom_71,
Nomascus leucogenys ENSNLEG00000002802 ortholog_one2one 4 retrogenes
retro_nleu_239, retro_nleu_283, retro_nleu_3078, retro_nleu_389,
Oryctolagus cuniculus ENSOCUG00000011908 ortholog_one2many 1 retrogene
retro_ocun_1252,
Otolemur garnettii ENSOGAG00000013424 ortholog_one2one 1 retrogene
retro_ogar_2855,
Oreochromis niloticus ENSONIG00000003785 ortholog_one2many 1 retrogene
retro_onil_18,
Procavia capensis ENSPCAG00000011858 ortholog_one2one 2 retrogenes
retro_pcap_421, retro_pcap_441,
Sarcophilus harrisii ENSSHAG00000014805 ortholog_one2one 3 retrogenes
retro_shar_144, retro_shar_439, retro_shar_576,
Tupaia belangeri ENSTBEG00000011219 ortholog_one2one 1 retrogene
retro_tbel_2268,
Tarsius syrichta ENSTSYG00000002953 ortholog_one2one 4 retrogenes
retro_tsyr_1150, retro_tsyr_1341, retro_tsyr_2103, retro_tsyr_794,
Tursiops truncatus ENSTTRG00000015083 ortholog_one2one 2 retrogenes
retro_ttru_713, retro_ttru_880,
Vicugna pacos ENSVPAG00000008404 ortholog_one2one 1 retrogene
retro_vpac_225,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_pabe_376 89.44 92.86
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2. retro_pabe_769 90.72 57.74
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3. retro_pabe_792 93.75 75.60
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4. retro_pabe_1735 90.57 94.05
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5. retro_pabe_1790 94.20 82.14
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6. retro_pabe_2838 85.62 94.05
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Download FASTA sequences of all ENSPPYG00000004947 retrocopies