RetrogeneDB ID: | retro_pabe_792 | ||
Retrocopylocation | Organism: | Orangutan (Pongo abelii) | |
Coordinates: | 11:90144550..90144930(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | ARPC3 | ||
Ensembl ID: | ENSPPYG00000004947 | ||
Aliases: | None | ||
Description: | actin related protein 2/3 complex, subunit 3, 21kDa [Source:HGNC Symbol;Acc:706] |
Percent Identity: | 93.75 % |
Parental protein coverage: | 75.6 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 1 |
Parental | MPAYHSSLMDPDTKLIGNMALLPIRSQFKGPAPRETKDTDIVDEA-IYYFKANVFFKNYEIKNEADRTLI |
MPAYHSSLMDPDTKLIGNMALLPIR.QFK.PA.RETKDTDI.D.A.IYYFKANVFFKNYEI.NEADRTLI | |
Retrocopy | MPAYHSSLMDPDTKLIGNMALLPIRRQFKVPALRETKDTDIADKA<IYYFKANVFFKNYEIMNEADRTLI |
Parental | YITLYISECLKKLQKCNSKSQGEKEMYTLGITNFPIPGEPGFPLNAIYAKPANKQEDE |
YITLYISECLKKLQKCNSKSQGEKEMYTLGITNFPIPGEPGFPLNAIYAKPANK.EDE | |
Retrocopy | YITLYISECLKKLQKCNSKSQGEKEMYTLGITNFPIPGEPGFPLNAIYAKPANK*EDE |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain_prefrontal_cortex | 0 .00 RPM | 14 .76 RPM |
SRP007412_cerebellum | 0 .00 RPM | 12 .40 RPM |
SRP007412_heart | 0 .09 RPM | 6 .35 RPM |
SRP007412_kidney | 0 .03 RPM | 16 .81 RPM |
SRP007412_liver | 0 .03 RPM | 17 .44 RPM |
Species | RetrogeneDB ID |
---|---|
Homo sapiens | retro_hsap_918 |