RetrogeneDB ID: | retro_dnov_685 | ||
Retrocopylocation | Organism: | Armadillo (Dasypus novemcinctus) | |
Coordinates: | GeneScaffold_784:26804..27205(+) | ||
Located in intron of: | ENSDNOG00000019938 | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | ARPC3 | ||
Ensembl ID: | ENSDNOG00000004987 | ||
Aliases: | None | ||
Description: | actin related protein 2/3 complex, subunit 3, 21kDa [Source:HGNC Symbol;Acc:706] |
Percent Identity: | 73.33 % |
Parental protein coverage: | 85.9 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 1 |
Parental | YHSSLMDPDTRLIGNMALLPIRSQFKGPAPRETKDTDIVDEAIYYFKANVFFK-NYEIKSEADRTLIYIT |
YHSSL.DPDTRL.GNMA.LPIRS.FKGP.PR....TD.V.EAIYYFKA.VFFK.NYEIK.EA.RTLI..T | |
Retrocopy | YHSSLIDPDTRLTGNMAWLPIRSKFKGPTPRKARYTDAVNEAIYYFKAIVFFK<NYEIKNEANRTLIEKT |
Parental | LYISECLKKLQKCNSKSQGEKEMYTLGITNFPIPGEPGFPLNAIYAKPANKQEDEVMRAYLQQLR |
.Y.SE.LKKLQKCNSK..GEKEMYT.GIT.FPIP.EP.FPL.AIYAK.AN.Q..E.MR.Y...LR | |
Retrocopy | VYKSEGLKKLQKCNSKD*GEKEMYTMGITSFPIPREPSFPLDAIYAKSANQQKAEEMRTYSKHLR |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP012922_ascending_colon | 0 .00 RPM | 67 .48 RPM |
SRP012922_cerebellum | 0 .00 RPM | 26 .39 RPM |
SRP012922_heart | 0 .00 RPM | 6 .73 RPM |
SRP012922_kidney | 0 .00 RPM | 31 .21 RPM |
SRP012922_liver | 0 .00 RPM | 24 .30 RPM |
SRP012922_lung | 0 .00 RPM | 32 .99 RPM |
SRP012922_quadricep_muscle | 0 .00 RPM | 4 .50 RPM |
SRP012922_spleen | 0 .00 RPM | 46 .13 RPM |