RetrogeneDB ID:

retro_nleu_2522

Retrocopy
location
Organism:Gibbon (Nomascus leucogenys)
Coordinates:GL397367.1:1760026..1760674(+)
Located in intron of:ENSNLEG00000011082
Retrocopy
information
Ensembl ID:None
Aliases:None
Status:NOVEL
Parental gene
information
Parental gene summary:
Parental gene symbol:NACA
Ensembl ID:ENSNLEG00000017449
Aliases:None
Description:nascent polypeptide-associated complex alpha subunit [Source:HGNC Symbol;Acc:7629]


Retrocopy-Parental alignment summary:






>retro_nleu_2522
CACAAAATGCCCAGTAAAGACAGAGAAACTGTCTCTGCTACGGAGCATTAATAGCCAGAGCCATAGGCTAAGATAGGGTC
TGTAACAGAATCTAACAGTGATGAATCAGTATCGGAGCTTGAGGAATAAAATTCCACACAGGCAATGACCACACAACAAG
CCCAGTTGTCAGCAGCAGCTGAAATTGATGAAGAACCAGTCAATAAAGCAAAACAGAGTTGGAGTGAAAAGAAGGCACAG
AAGGTTATATCCAAACTGGGTTTTAAGCAGGTTACAGGGGTTACTAGAGACACTATTTGGGAATCTAAGAATACTCTGTC
ATCACAAAACCAGATGTCTGTAAGATCCCAGCATCAAATACCAACATGGTTTTTAAGGGAAGCTGAGATTGAGGTTTATC
TCAGCAAGCACAGCTAGCGGCTACTGAGAAATTCAAAGTTCAGGGTGAAGCTCTGAAACATTCAAGGAAACATACAGCCT
CTTCCAACTGTACAAGAGGAGAGTAAAGAGGAAGTTGACGAAACATGTGTGAAAATTAAGGACACAGAATTGGTCATGTT
GCAAGCAAATGTATTAAGAACAAAGGCAGTTCAAGCCCTGAAGAACAACAGTAATGATATTGTTAATGTGATTATGGAAT
TAGCAATG

ORF - retro_nleu_2522 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: 65. %
Parental protein coverage: 92.74 %
Number of stop codons detected: 4
Number of frameshifts detected 2


Retrocopy - Parental Gene Alignment:

ParentalNEMPGEATETVLATEQELPQPQAETGSGTESDSDESVPELEEQDSTQA-TTQQAQLAAAAEIDEEPVSKA
..MP....ETV.ATE...P.P.A..GS.TES.SDESV.ELEE..STQA.TTQQAQL.AAAEIDEEPV.KA
RetrocopyHKMPSKDRETVSATEH**PEP*AKIGSVTESNSDESVSELEE*NSTQAMTTQQAQLSAAAEIDEEPVNKA
ParentalKQSRSEKKARKAMSKLGLRQVTGVTRVTIRKSKNILFVITKPDVYKSPASDTYIVFGEAKIE-DLSQQAQ
KQS.SEKKA.K..SKLG..QVTGVTR.TI..SKN.L.......V.......T.....EA.IE..LSQQAQ
RetrocopyKQSWSEKKAQKVISKLGFKQVTGVTRDTIWESKNTLSSQNQMSVRSQHQIPTWFL-REAEIE<GLSQQAQ
ParentalLAAAEKFKVQGEAVSNIQENTQT-PTVQEESEEEEVDETGVEVKDIELVMSQANVSRAKAVRALKNNSND
LAA.EKFKVQGEA.......T...PTVQEES..EEVDET.V..KD.ELVM.QANV.R.KAV.ALKNNSND
RetrocopyLAATEKFKVQGEALKHSRKHTAS>PTVQEES-KEEVDETCVKIKDTELVMLQANVLRTKAVQALKNNSND
ParentalIVNAIMELTM
IVN.IMEL.M
RetrocopyIVNVIMELAM

Legend:
*Stop codon
>Forward frameshift by one nucleotide
<Reverse frameshift by one nucleotide






Nomascus leucogenys was not studied using RNA-Seq expression data.
Nomascus leucogenys was not studied using ChIP-Seq data.
Nomascus leucogenys was not studied using EST data.
Nomascus leucogenys was not studied using FANTOM5 data.
retro_nleu_2522 was not experimentally validated.

Retrocopy orthology:
Nomascus leucogenys does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

Parental genes homology:
Parental genes homology involve 18 parental genes, and 84 retrocopies.

Species Parental gene accession Retrocopies number
Ailuropoda melanoleuca ENSAMEG000000041753 retrocopies
Bos taurus ENSBTAG000000107012 retrocopies
Canis familiaris ENSCAFG000000001418 retrocopies
Callithrix jacchus ENSCJAG000000107018 retrocopies
Dipodomys ordii ENSDORG000000145222 retrocopies
Erinaceus europaeus ENSEEUG000000104585 retrocopies
Loxodonta africana ENSLAFG000000045986 retrocopies
Macropus eugenii ENSMEUG000000084123 retrocopies
Microcebus murinus ENSMICG000000164655 retrocopies
Myotis lucifugus ENSMLUG0000000116916 retrocopies
Mus musculus ENSMUSG000000613151 retrocopy
Nomascus leucogenys ENSNLEG00000017449 7 retrocopies
Ochotona princeps ENSOPRG000000017813 retrocopies
Procavia capensis ENSPCAG000000070675 retrocopies
Pongo abelii ENSPPYG000000046706 retrocopies
Sarcophilus harrisii ENSSHAG000000021751 retrocopy
Ictidomys tridecemlineatus ENSSTOG000000090281 retrocopy
Vicugna pacos ENSVPAG000000040282 retrocopies



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