RetrogeneDB ID: | retro_pabe_26 | ||
Retrocopylocation | Organism: | Orangutan (Pongo abelii) | |
Coordinates: | 17_random:989636..990284(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSPPYG00000008801 | |
Aliases: | None | ||
Status: | KNOWN_PROTEIN_CODING | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | NACA | ||
Ensembl ID: | ENSPPYG00000004670 | ||
Aliases: | None | ||
Description: | nascent polypeptide-associated complex subunit alpha [Source:RefSeq peptide;Acc:NP_001125923] |
Percent Identity: | 93.49 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | MPGEATETVPATEQELPQPQAETGSGTESDSDESVPELEEQDSTQATTQQAQLAAAAEIDEEPVSKAKQS |
MPGEATETVPATEQELPQPQAETGSGT.SDS.ESVP.LEEQDSTQ.TTQ.A.L.AAAEIDEEPVSKAKQS | |
Retrocopy | MPGEATETVPATEQELPQPQAETGSGTASDSGESVPGLEEQDSTQTTTQKARLVAAAEIDEEPVSKAKQS |
Parental | RSEKKARKAMSKLGLRQVTGVTRVTIRKSKNILFVITKPDVYKSPASDTYIVFGEAKIEDLSQQAQLAAA |
RSEK.ARKAMSKLGL.QVTGVTRVTI.KSKNILFVITKPDVYKSPASD.YIVFGEAKI.DLSQQAQLAAA | |
Retrocopy | RSEKRARKAMSKLGLLQVTGVTRVTIWKSKNILFVITKPDVYKSPASDAYIVFGEAKIQDLSQQAQLAAA |
Parental | EKFKVQGEAVSNIQENTQTPTVQEESEEEEVDETGVEVKDIELVMSQANVSRAKAVRALKNNSNDIVNAI |
EKFKVQGEAV.NIQENTQTPTVQEESEEEEVDETGVEVKDIELVMSQ.NVSRAKAVRALKNNSNDIVNAI | |
Retrocopy | EKFKVQGEAVANIQENTQTPTVQEESEEEEVDETGVEVKDIELVMSQVNVSRAKAVRALKNNSNDIVNAI |
Parental | MELTM |
MELTM | |
Retrocopy | MELTM |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain_prefrontal_cortex | 0 .11 RPM | 96 .54 RPM |
SRP007412_cerebellum | 0 .12 RPM | 158 .81 RPM |
SRP007412_heart | 0 .09 RPM | 117 .64 RPM |
SRP007412_kidney | 0 .20 RPM | 237 .50 RPM |
SRP007412_liver | 0 .15 RPM | 217 .52 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Ailuropoda melanoleuca | ENSAMEG00000004175 | 3 retrocopies | |
Bos taurus | ENSBTAG00000010701 | 2 retrocopies | |
Canis familiaris | ENSCAFG00000000141 | 8 retrocopies | |
Callithrix jacchus | ENSCJAG00000010701 | 8 retrocopies | |
Dipodomys ordii | ENSDORG00000014522 | 2 retrocopies | |
Erinaceus europaeus | ENSEEUG00000010458 | 5 retrocopies | |
Loxodonta africana | ENSLAFG00000004598 | 6 retrocopies | |
Microcebus murinus | ENSMICG00000016465 | 5 retrocopies | |
Myotis lucifugus | ENSMLUG00000001169 | 16 retrocopies | |
Mus musculus | ENSMUSG00000061315 | 1 retrocopy | |
Nomascus leucogenys | ENSNLEG00000017449 | 7 retrocopies | |
Ochotona princeps | ENSOPRG00000001781 | 3 retrocopies | |
Procavia capensis | ENSPCAG00000007067 | 5 retrocopies | |
Pongo abelii | ENSPPYG00000004670 | 6 retrocopies | |
Sarcophilus harrisii | ENSSHAG00000002175 | 1 retrocopy | |
Ictidomys tridecemlineatus | ENSSTOG00000009028 | 1 retrocopy | |
Vicugna pacos | ENSVPAG00000004028 | 2 retrocopies |