RetrogeneDB ID:

retro_mmur_1122

Retrocopy
location
Organism:Mouse Lemur (Microcebus murinus)
Coordinates:scaffold_23835:6397..6808(+)
Located in intron of:None
Retrocopy
information
Ensembl ID:ENSMICG00000002924
Aliases:None
Status:KNOWN_PSEUDOGENE
Parental gene
information
Parental gene summary:
Parental gene symbol:NACA2
Ensembl ID:ENSMICG00000016465
Aliases:None
Description:nascent polypeptide-associated complex alpha subunit 2 [Source:HGNC Symbol;Acc:23290]


Retrocopy-Parental alignment summary:






>retro_mmur_1122
GCTATGTCCAAACTGGGTCTTCGGCAGGTTACAGGGGTTACTAGAGTCAGTATCCAGAAATCTAAGAATATCTTCTTTGT
CATCACAAAACCAGTTGTCTACTAGAGCCCAGCTTCAGATACCTACATAGTTTTCATGGAAGCCAAGATCGAGGATTTGT
CTCAGCAGGGGCAGCTAGCAGCTGCTGAGAAATTCAAAGTTCAAGGTGAAGCTGTTTCAAACATTCAAGAAAACACACAG
ACTCCAACTGTACAAGAGGAGAGTGAAGAGGAAGAGGCTGATGAAACAGGTGTGGAAGTTAAAGACATAGAATTGGTCAT
GTCACAAGCAAATGTGTCGAGAGCAAAGGCACTGGGAGCCCTGAAGTACAACAGTAATGATATTGTAAATGCTATTAGGA
AATTAACAATG

ORF - retro_mmur_1122 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: 90.51 %
Parental protein coverage: 100. %
Number of stop codons detected: 1
Number of frameshifts detected 0


Retrocopy - Parental Gene Alignment:

ParentalAMSKLGLRQVTGVTRVTIRKSKNILFVITKPDVYKSPASDTYIVFGEAKIEDLSQQAQLAAAEKFKVQGE
AMSKLGLRQVTGVTRV.I.KSKNI.FVITKP.VY.SPASDTYIVF.EAKIEDLSQQ.QLAAAEKFKVQGE
RetrocopyAMSKLGLRQVTGVTRVSIQKSKNIFFVITKPVVY*SPASDTYIVFMEAKIEDLSQQGQLAAAEKFKVQGE
ParentalAVSNIQENTQTPTVQEESEEEEVDETGVEVKDIELVMSQANVSRAKAVRALKNNSNDIVNAIMELTM
AVSNIQENTQTPTVQEESEEEE.DETGVEVKDIELVMSQANVSRAKA..ALK.NSNDIVNAI..LTM
RetrocopyAVSNIQENTQTPTVQEESEEEEADETGVEVKDIELVMSQANVSRAKALGALKYNSNDIVNAIRKLTM

Legend:
*Stop codon
>Forward frameshift by one nucleotide
<Reverse frameshift by one nucleotide






Microcebus murinus was not studied using RNA-Seq expression data.
Microcebus murinus was not studied using ChIP-Seq data.
No EST(s) were mapped for retro_mmur_1122 retrocopy.
Microcebus murinus was not studied using FANTOM5 data.
retro_mmur_1122 was not experimentally validated.

Retrocopy orthology:
Microcebus murinus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

Parental genes homology:
Parental genes homology involve 14 parental genes, and 81 retrocopies.

Species Parental gene accession Retrocopies number
Ailuropoda melanoleuca ENSAMEG000000041753 retrocopies
Canis familiaris ENSCAFG000000001418 retrocopies
Callithrix jacchus ENSCJAG000000107018 retrocopies
Dipodomys ordii ENSDORG000000145222 retrocopies
Homo sapiens ENSG000001965316 retrocopies
Loxodonta africana ENSLAFG000000045986 retrocopies
Microcebus murinus ENSMICG00000016465 5 retrocopies
Myotis lucifugus ENSMLUG0000000116916 retrocopies
Macaca mulatta ENSMMUG000000030734 retrocopies
Nomascus leucogenys ENSNLEG000000174497 retrocopies
Ochotona princeps ENSOPRG000000017813 retrocopies
Procavia capensis ENSPCAG000000070675 retrocopies
Pongo abelii ENSPPYG000000046706 retrocopies
Vicugna pacos ENSVPAG000000040282 retrocopies



Copyright © RetrogeneDB 2014-2017