RetrogeneDB ID: | retro_pcap_224 | ||
Retrocopylocation | Organism: | Hyrax (Procavia capensis) | |
Coordinates: | scaffold_188336:509..920(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSPCAG00000008535 | |
Aliases: | None | ||
Status: | KNOWN_PSEUDOGENE | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | NACA2 | ||
Ensembl ID: | ENSPCAG00000007067 | ||
Aliases: | None | ||
Description: | nascent polypeptide-associated complex alpha subunit 2 [Source:HGNC Symbol;Acc:23290] |
Percent Identity: | 90.51 % |
Parental protein coverage: | 63.72 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | AMSKLGLRQVTGVTRVTIRKSKNILFVITKPDVYKSPASDTYIVFGEAKIEDLSQQAQLAAAEKFKVQGE |
AMSKLGLRQVTG.TRVTIRKS.NILFVITKPDVYKSPASDTY.V.GEAK.EDLSQQAQLAAAEKFKVQ.E | |
Retrocopy | AMSKLGLRQVTGATRVTIRKSENILFVITKPDVYKSPASDTYMVWGEAKTEDLSQQAQLAAAEKFKVQDE |
Parental | AVSNIQENTQTPTVQEESEEEEVDETGVEVKDIELVMSQANVSRAKAVRALKNNSNDIVNAIMELTM |
AVSNIQENTQTPTVQEESEEEE.DETGVEVKDI..VMS.AN.SRA.AV.ALKNNSNDIVNAIMELTM | |
Retrocopy | AVSNIQENTQTPTVQEESEEEEDDETGVEVKDIDFVMSPANLSRAQAVQALKNNSNDIVNAIMELTM |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Ailuropoda melanoleuca | ENSAMEG00000004175 | 3 retrocopies | |
Canis familiaris | ENSCAFG00000000141 | 8 retrocopies | |
Callithrix jacchus | ENSCJAG00000010701 | 8 retrocopies | |
Dipodomys ordii | ENSDORG00000014522 | 2 retrocopies | |
Homo sapiens | ENSG00000196531 | 6 retrocopies | |
Loxodonta africana | ENSLAFG00000004598 | 6 retrocopies | |
Microcebus murinus | ENSMICG00000016465 | 5 retrocopies | |
Myotis lucifugus | ENSMLUG00000001169 | 16 retrocopies | |
Macaca mulatta | ENSMMUG00000003073 | 4 retrocopies | |
Nomascus leucogenys | ENSNLEG00000017449 | 7 retrocopies | |
Ochotona princeps | ENSOPRG00000001781 | 3 retrocopies | |
Procavia capensis | ENSPCAG00000007067 | 5 retrocopies | |
Pongo abelii | ENSPPYG00000004670 | 6 retrocopies | |
Vicugna pacos | ENSVPAG00000004028 | 2 retrocopies |