RetrogeneDB ID: | retro_rnor_2714 | ||
Retrocopylocation | Organism: | Rat (Rattus norvegicus) | |
Coordinates: | 9:4265218..4265857(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | Actb | ||
Ensembl ID: | ENSRNOG00000034254 | ||
Aliases: | Actb, Actx | ||
Description: | Actin, cytoplasmic 1 Actin, cytoplasmic 1, N-terminally processed [Source:UniProtKB/Swiss-Prot;Acc:P60711] |
Percent Identity: | 73.64 % |
Parental protein coverage: | 57.87 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 3 |
Parental | MDDDIAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRGILTLKYP |
M...IA.LV.DNGS..CKAGFA...APRA.F.SIVG.P.HQGVM.G.GQKDSYVGDE.QSKRGILTLKYP | |
Retrocopy | MEEEIATLVIDNGSVRCKAGFAYYHAPRAMFSSIVGQP*HQGVMAGTGQKDSYVGDETQSKRGILTLKYP |
Parental | IEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMF-ETFNTPAMYVAIQAV |
IEHG.V.NWDDMEKIWHHTF.NELRVAPE....LLTE....P.........IM..ET.NTPAMY.AIQAV | |
Retrocopy | IEHGVVINWDDMEKIWHHTFCNELRVAPEVPLGLLTEV---PLNSKANREKIML<ETSNTPAMYMAIQAV |
Parental | LSLYASGRTTGIVMDSGDG-VTHTVPIYEGYALPHAILRLDLAGR-DLTDYLMKILTERGYSFTTTAERE |
.SLYAS..TTGIVMDSGDG.V.HTV.IYEGYALP.AIL.LDLAG...L..YLMKILTE..YSFTTTAERE | |
Retrocopy | RSLYASAHTTGIVMDSGDG<VIHTVSIYEGYALPYAILGLDLAGK<GLSNYLMKILTEWSYSFTTTAERE |
Parental | IVRDIKEKLC |
IV.DIKE.LC | |
Retrocopy | IVHDIKENLC |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .00 RPM | 855 .93 RPM |
SRP017611_kidney | 0 .00 RPM | 1102 .49 RPM |
SRP017611_liver | 0 .00 RPM | 363 .62 RPM |