RetrogeneDB ID: | retro_hsap_3386 | ||
Retrocopylocation | Organism: | Human (Homo sapiens) | |
Coordinates: | 5:130994856..130995808(-) | ||
Located in intron of: | ENSG00000217128 | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | ACTB | ||
Ensembl ID: | ENSG00000075624 | ||
Aliases: | ACTB, BRWS1, PS1TP5BP1 | ||
Description: | actin, beta [Source:HGNC Symbol;Acc:132] |
Percent Identity: | 81.25 % |
Parental protein coverage: | 84.8 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 2 |
Parental | MDDDIAALVVDNGSGMCKAGFAGDDAP-RAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRGILTLKY |
MD.DIA.LVVDNGSGM.K..F.G.DAP.RAVFPSI.G.PRHQGVM.GMG.KD.YV...AQSKRGI.TLKY | |
Retrocopy | MDNDIAVLVVDNGSGMWKVCFTGNDAP<RAVFPSIMGHPRHQGVMMGMGRKDFYVSNKAQSKRGIMTLKY |
Parental | PIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNP-KANREKMTQIMFETFNTPAMYVAIQA |
P.EHGI.TNWDDMEKIWHHTFYNEL.VAP.EH..LLTE.PLNP.KAN..KMTQIMFETFNTPA.Y.AIQA | |
Retrocopy | PMEHGIITNWDDMEKIWHHTFYNELHVAPKEHRMLLTEVPLNP<KANHKKMTQIMFETFNTPAVYMAIQA |
Parental | VLSLYASGRTTGIVMDSGDGVTHTVPIYEGYALPHAILRLDLAGRDLTDYLMKILTERGYSFTTTAEREI |
.LSLY..G.TTGIVMDS.DGVTHTVPIYEGYALP.AIL.LD.AGRDLT.YLMKILTE..YSFTT.AEREI | |
Retrocopy | MLSLYTYGCTTGIVMDSSDGVTHTVPIYEGYALPRAILCLDVAGRDLTNYLMKILTEHSYSFTTMAEREI |
Parental | VRDIKEKLCYVALDFEQEMATAASSSSLEKSYELPDGQVITIGNERFRCPEALFQPSFLGMESCGIHETT |
V.DIKEKL.YV.LDFEQEMATAASSSSLEKSYEL.DGQVITIGNE...CPEALFQPSFL.MESC.IH.TT | |
Retrocopy | VCDIKEKLYYVTLDFEQEMATAASSSSLEKSYELSDGQVITIGNELSCCPEALFQPSFLSMESCDIHKTT |
Parental | FNSIMKCDVDIRKDLYANTVLSGGTTMYPGIADRMQKEIT |
FNSIMKCD.DIRKDLY.NTVL.GG..MYPGIA.R.QK..T | |
Retrocopy | FNSIMKCDMDIRKDLYTNTVLFGGNNMYPGIANRVQKIVT |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
bodymap2_adipose | 0 .06 RPM | 5336 .71 RPM |
bodymap2_adrenal | 0 .04 RPM | 5105 .37 RPM |
bodymap2_brain | 0 .09 RPM | 2354 .74 RPM |
bodymap2_breast | 0 .12 RPM | 3342 .68 RPM |
bodymap2_colon | 0 .00 RPM | 6846 .79 RPM |
bodymap2_heart | 0 .02 RPM | 595 .89 RPM |
bodymap2_kidney | 0 .00 RPM | 2141 .79 RPM |
bodymap2_liver | 0 .02 RPM | 1498 .34 RPM |
bodymap2_lung | 0 .09 RPM | 6019 .68 RPM |
bodymap2_lymph_node | 0 .07 RPM | 3028 .73 RPM |
bodymap2_ovary | 0 .02 RPM | 4495 .81 RPM |
bodymap2_prostate | 0 .00 RPM | 6984 .69 RPM |
bodymap2_skeletal_muscle | 0 .00 RPM | 729 .01 RPM |
bodymap2_testis | 0 .04 RPM | 2997 .25 RPM |
bodymap2_thyroid | 0 .00 RPM | 1886 .18 RPM |
bodymap2_white_blood_cells | 0 .00 RPM | 9289 .16 RPM |
Species | RetrogeneDB ID |
---|---|
Gorilla gorilla | retro_ggor_2292 |
Library | Retrogene expression |
---|---|
CEU_NA11831 | 0 .06 RPM |
CEU_NA11843 | 0 .03 RPM |
CEU_NA11930 | 0 .07 RPM |
CEU_NA12004 | 0 .00 RPM |
CEU_NA12400 | 0 .00 RPM |
CEU_NA12751 | 0 .00 RPM |
CEU_NA12760 | 0 .00 RPM |
CEU_NA12827 | 0 .09 RPM |
CEU_NA12872 | 0 .00 RPM |
CEU_NA12873 | 0 .00 RPM |
FIN_HG00183 | 0 .03 RPM |
FIN_HG00277 | 0 .00 RPM |
FIN_HG00315 | 0 .00 RPM |
FIN_HG00321 | 0 .03 RPM |
FIN_HG00328 | 0 .02 RPM |
FIN_HG00338 | 0 .00 RPM |
FIN_HG00349 | 0 .00 RPM |
FIN_HG00375 | 0 .02 RPM |
FIN_HG00377 | 0 .00 RPM |
FIN_HG00378 | 0 .00 RPM |
GBR_HG00099 | 0 .03 RPM |
GBR_HG00111 | 0 .00 RPM |
GBR_HG00114 | 0 .00 RPM |
GBR_HG00119 | 0 .02 RPM |
GBR_HG00131 | 0 .00 RPM |
GBR_HG00133 | 0 .02 RPM |
GBR_HG00134 | 0 .02 RPM |
GBR_HG00137 | 0 .03 RPM |
GBR_HG00142 | 0 .03 RPM |
GBR_HG00143 | 0 .03 RPM |
TSI_NA20512 | 0 .00 RPM |
TSI_NA20513 | 0 .05 RPM |
TSI_NA20518 | 0 .00 RPM |
TSI_NA20532 | 0 .03 RPM |
TSI_NA20538 | 0 .05 RPM |
TSI_NA20756 | 0 .00 RPM |
TSI_NA20765 | 0 .02 RPM |
TSI_NA20771 | 0 .00 RPM |
TSI_NA20786 | 0 .03 RPM |
TSI_NA20798 | 0 .03 RPM |
YRI_NA18870 | 0 .03 RPM |
YRI_NA18907 | 0 .00 RPM |
YRI_NA18916 | 0 .00 RPM |
YRI_NA19093 | 0 .03 RPM |
YRI_NA19099 | 0 .03 RPM |
YRI_NA19114 | 0 .03 RPM |
YRI_NA19118 | 0 .00 RPM |
YRI_NA19213 | 0 .00 RPM |
YRI_NA19214 | 0 .00 RPM |
YRI_NA19223 | 0 .00 RPM |