RetrogeneDB ID: | retro_mmus_3411 | ||
Retrocopylocation | Organism: | Mouse (Mus musculus) | |
Coordinates: | X:5665371..5665965(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSMUSG00000082270 | |
Aliases: | None | ||
Status: | KNOWN_PSEUDOGENE | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | Actb | ||
Ensembl ID: | ENSMUSG00000029580 | ||
Aliases: | Actb, Actx, E430023M04Rik, beta-actin | ||
Description: | actin, beta [Source:MGI Symbol;Acc:MGI:87904] |
Percent Identity: | 63.24 % |
Parental protein coverage: | 75.09 % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 5 |
Parental | MDDDIAALVVDNGSGMCKAGFAGDDAP-RAVFPSIVGRP-RHQGVMVGMGQKDSYVGDEAQSKRGILTLK |
.DDD..A..VDNGSG..KA.FAG.DAP.RA.FPSI.G.P.RH.GV.V...QKD...G.EAQSKRGIL.LK | |
Retrocopy | LDDDLTAFLVDNGSGLDKAWFAGYDAP<RAIFPSILGLP>RHHGVTVDKRQKDTFMGAEAQSKRGILILK |
Parental | YPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLT-EAPLNPKANREKMTQIMFETFNTPAMYVAIQ |
YPI.H.IVTNW..MEKIWH.TFYN.L.V..E...VLLT..AP..PKAN.EKM..IMFET..T..M.VAIQ | |
Retrocopy | YPIDHDIVTNWFNMEKIWHQTFYNKLHVVLEGNTVLLT<HAP*SPKANFEKMAHIMFETYKTTTM*VAIQ |
Parental | A-VLSLYASGRTTGIVMDSGDGVTHTVPIYEGYAL-PHAILRLDLAGRDLTDYLMKILTERGYS |
...L.LYASG.TTGI.M...DGVT..V.IYE...L.P.AI..LDLAG..LT.Y.MK..T..GYS | |
Retrocopy | T<LLFLYASGCTTGILMEYRDGVTSNVHIYESSVL<PCAIPCLDLAGLYLTAYYMKFMTTCGYS |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain | 0 .02 RPM | 922 .02 RPM |
SRP007412_cerebellum | 0 .00 RPM | 706 .77 RPM |
SRP007412_heart | 0 .00 RPM | 464 .18 RPM |
SRP007412_kidney | 0 .00 RPM | 679 .61 RPM |
SRP007412_liver | 0 .00 RPM | 437 .32 RPM |
SRP007412_testis | 0 .00 RPM | 567 .67 RPM |