RetrogeneDB ID: | retro_mmus_2880 | ||
Retrocopylocation | Organism: | Mouse (Mus musculus) | |
Coordinates: | 6:133761447..133762094(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | Actb | ||
Ensembl ID: | ENSMUSG00000029580 | ||
Aliases: | Actb, Actx, E430023M04Rik, beta-actin | ||
Description: | actin, beta [Source:MGI Symbol;Acc:MGI:87904] |
Percent Identity: | 92.63 % |
Parental protein coverage: | 57.6 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 1 |
Parental | THTVPIYEGYALPHAILRLDLAGRDLTDYLMKILTERGYSFTTTAEREIVRDIKEKLCYVALDFEQEMAT |
THTVPIYEGY.LPHAIL.LDLAG.DLT.YLMKILTE.G.SF..TAEREIVRDIKEKLCYVALDFEQEMAT | |
Retrocopy | THTVPIYEGYPLPHAILHLDLAGWDLTNYLMKILTEQGNSFSNTAEREIVRDIKEKLCYVALDFEQEMAT |
Parental | AASSSSLEKSYELPDGQVITIGNERFRCPEALFQPSFLGMESCGIHETT-FNSIMKCDVDIRKDLYANTV |
AASSSSLEKSYELP.GQ.ITIGNERF.CPEALFQPSFLGMESCGIHETT..NSIMKCDVDI.KDLYANTV | |
Retrocopy | AASSSSLEKSYELPNGQAITIGNERFQCPEALFQPSFLGMESCGIHETT<LNSIMKCDVDICKDLYANTV |
Parental | LSGGTTMYPGIADRMQKEITALAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQEYDESGPS |
LSGGTTMYPGIADRMQKEITALAPSTMKIKIIAPPERKYSVWI.GSILASLSTFQQMWISKQEYDESGPS | |
Retrocopy | LSGGTTMYPGIADRMQKEITALAPSTMKIKIIAPPERKYSVWISGSILASLSTFQQMWISKQEYDESGPS |
Parental | IVHRKCF |
IVH.KCF | |
Retrocopy | IVHCKCF |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain | 0 .07 RPM | 922 .02 RPM |
SRP007412_cerebellum | 0 .04 RPM | 706 .77 RPM |
SRP007412_heart | 0 .16 RPM | 464 .18 RPM |
SRP007412_kidney | 0 .23 RPM | 679 .61 RPM |
SRP007412_liver | 0 .00 RPM | 437 .32 RPM |
SRP007412_testis | 0 .05 RPM | 567 .67 RPM |