RetrogeneDB ID: | retro_ggor_2817 | ||
Retrocopylocation | Organism: | Gorilla (Gorilla gorilla) | |
Coordinates: | 9:82869337..82870406(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | ACTB | ||
Ensembl ID: | ENSGGOG00000001133 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 83.43 % |
Parental protein coverage: | 94.69 % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 5 |
Parental | LTMDDDIAALVVDNGSGMCKAGFAGDDAPR-AVFP-SIVGRPRHQGVMVGMGQKDSYVG-DEAQSKRGIL |
LTMDDDIA.LV.DNGSGMCKA.FAGD..P..A.FP.SIV.RPRHQGVMVGMGQKD.YVG..EAQSKRGIL | |
Retrocopy | LTMDDDIAPLVIDNGSGMCKADFAGDNVPL>AIFP>SIVERPRHQGVMVGMGQKDLYVG>NEAQSKRGIL |
Parental | TLKYPIEHG-IVTNWDDMEKIWHHTFYNELRVAPEEHP-VLLTEAPLNPKANREKMTQIMFETFNTPAMY |
TLKYPIEH..IVT.WDDMEKIWHHTFYNEL.VAPEE.P.V.LTEAP.N.KAN..KMTQIMFETFNTPA.Y | |
Retrocopy | TLKYPIEHT<IVTTWDDMEKIWHHTFYNELGVAPEERP<VQLTEAPMNHKANCKKMTQIMFETFNTPATY |
Parental | VAIQAVLSLYASGRTTGIVMDSGDGVTHTVPIYEGYALPHAILRLDLAGRDLTDYLMKILTERGYSFTTT |
VAIQA..SLYASGRTT.I.MDS.DGVTHTVP.Y.GYALPHAIL.LDLAG.DLT.YLMKILT.RGYSFTT. | |
Retrocopy | VAIQALWSLYASGRTTSIMMDSVDGVTHTVPMYKGYALPHAILHLDLAGWDLTGYLMKILT*RGYSFTTR |
Parental | AEREIVRDIKEKLCYVALDFEQEMATAASSSSLEKSYELPDGQVITIGNERFRCPEALFQPSFLGMESCG |
AE.EI..DIKEKLCYVALDFEQEMATAASSSSLEKS.ELP..QVITIGNE.F.CP..LFQPSFLGMESCG | |
Retrocopy | AEQEIAHDIKEKLCYVALDFEQEMATAASSSSLEKS*ELPYCQVITIGNEHFLCPKVLFQPSFLGMESCG |
Parental | IHETTFNSIMKCDVDIRKDLYANTVLSGGTTMYPGIADRMQKEITALAPSTMKIKIIAPPERKYSVWIGG |
IHET.F.SIMKCDVDI.KDLYAN.VLS.GTTM.PG...RMQKEITAL.PSTMKIKIIAPPE.KYSVWI.G | |
Retrocopy | IHETAFDSIMKCDVDIHKDLYANPVLSDGTTMNPGNPNRMQKEITALVPSTMKIKIIAPPELKYSVWI-G |
Parental | SILASLSTFQQM |
SILASLSTFQQ. | |
Retrocopy | SILASLSTFQQI |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain_prefrontal_cortex | 0 .05 RPM | 1553 .47 RPM |
SRP007412_cerebellum | 0 .12 RPM | 976 .01 RPM |
SRP007412_heart | 0 .03 RPM | 356 .23 RPM |
SRP007412_kidney | 0 .00 RPM | 1454 .29 RPM |
SRP007412_liver | 0 .05 RPM | 1317 .16 RPM |
SRP007412_testis | 0 .10 RPM | 692 .36 RPM |
Species | RetrogeneDB ID |
---|---|
Homo sapiens | retro_hsap_4204 |
Pan troglodytes | retro_ptro_2854 |