RetrogeneDB ID: | retro_ggor_1188 | ||
Retrocopylocation | Organism: | Gorilla (Gorilla gorilla) | |
Coordinates: | 15:22712142..22713269(-) | ||
Located in intron of: | ENSGGOG00000017045 | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | ACTB | ||
Ensembl ID: | ENSGGOG00000001133 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 79.84 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 4 |
Parental | LTMDDDIAALVVDNGSGMCKAGFAGDDA-PRAVFPSI-VGRPRHQGVMVGMGQKDSYVGDEAQSKRGILT |
LTMDDDI..LVVDNGSGMCKA.FAGDDA.P....P...VGRPRHQ.V.VGMGQKDSYVGDEAQSKRGILT | |
Retrocopy | LTMDDDITMLVVDNGSGMCKASFAGDDAHPGLSSPPL<VGRPRHQVVTVGMGQKDSYVGDEAQSKRGILT |
Parental | LKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNTPAMYVAI |
LKYPI...IVT.WDDMEKIWHH.FYNEL.VA..EHP.LLT..PL.PKAN..KMTQIM.E.F..PAMYVAI | |
Retrocopy | LKYPIKQDIVTTWDDMEKIWHHIFYNELCVAAKEHPMLLTKVPLSPKANHKKMTQIMLEIFDRPAMYVAI |
Parental | QAVLSLYASG-RTTGIVMDSGDGVTHTVPIYEGYALPHAILRLDLAGRDLTDYLMKILTERGYSFTTTAE |
QAVL.LY.SG..TT.IVMD.GDGVTHTVPIYE.Y.LPHAILR.DLAG.DLTDYLMKILT...Y.FT.TA. | |
Retrocopy | QAVLPLYTSG<PTTDIVMDYGDGVTHTVPIYEEYTLPHAILRVDLAGQDLTDYLMKILT*HSYIFTATAK |
Parental | REIVRDIKEKLCYVALDFEQEMATAASSSSLE-KSYELPDGQVITIG-NERFRCPEALFQPSFLGMESCG |
REIV.DIKEKLCYV.LDF.QEMA..ASSSSLE..SY.LPDGQVI.IG....F.CP.ALFQPSFLGMES.G | |
Retrocopy | REIVHDIKEKLCYVTLDFKQEMAMVASSSSLE<DSYKLPDGQVIIIG<QKQFCCPAALFQPSFLGMESRG |
Parental | IHETTFNSIMKCDVDIRKDLYANTVLSGGTTMYPGIADRMQKEITALAPSTMKIKIIAPPERKYSVWIGG |
IHETTFNSIMKCDVDI.KDLYANTVLSGGTT.YPGIADRM.K.IT.LAPSTMKIKI.APP.RKYSVWIG. | |
Retrocopy | IHETTFNSIMKCDVDILKDLYANTVLSGGTTTYPGIADRMLK-ITTLAPSTMKIKITAPPKRKYSVWIGS |
Parental | SILASLSTFQQMWISKQEYDESGPSIVHRKCF |
SILA.LST.QQMWISKQEYDESG.SI.HR..F | |
Retrocopy | SILARLSTVQQMWISKQEYDESGTSIIHRRWF |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain_prefrontal_cortex | 0 .38 RPM | 1553 .47 RPM |
SRP007412_cerebellum | 0 .71 RPM | 976 .01 RPM |
SRP007412_heart | 0 .09 RPM | 356 .23 RPM |
SRP007412_kidney | 0 .12 RPM | 1454 .29 RPM |
SRP007412_liver | 0 .21 RPM | 1317 .16 RPM |
SRP007412_testis | 0 .31 RPM | 692 .36 RPM |
Species | RetrogeneDB ID |
---|---|
Homo sapiens | retro_hsap_1563 |
Pan troglodytes | retro_ptro_1051 |
Pongo abelii | retro_pabe_1292 |