RetrogeneDB ID: | retro_rnor_2978 | ||
Retrocopylocation | Organism: | Rat (Rattus norvegicus) | |
Coordinates: | X:125542684..125543345(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | Actb | ||
Ensembl ID: | ENSRNOG00000034254 | ||
Aliases: | Actb, Actx | ||
Description: | Actin, cytoplasmic 1 Actin, cytoplasmic 1, N-terminally processed [Source:UniProtKB/Swiss-Prot;Acc:P60711] |
Percent Identity: | 62.33 % |
Parental protein coverage: | 58.93 % |
Number of stop codons detected: | 4 |
Number of frameshifts detected | 2 |
Parental | MDDDIAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRGILTLKYP |
M.D.IA...VDNGS.MCKA.F.....P.A.F..I......Q...V..GQKD.YV.D..Q.KR.ILTL.Y. | |
Retrocopy | MNDEIALFLVDNGSSMCKASFTNKKVP*AIFFLIMSHAMYQDGVVDLGQKDTYVYDDVQNKRSILTL*YS |
Parental | IEHGIVTNWDDMEKIWHHT-FYNELRVAPEEHPVLLTE-APLNPKANREKMTQIMFETFNTPAMYVAIQA |
I.HG.VT....M.KIWHHT..Y..L.VA.EEH.VL..E.APLN.KAN.EK.T.IMF.TF.TP.M..A.QA | |
Retrocopy | IDHGNVTSSNNMKKIWHHT<LYTKLHVASEEHLVLFLE<APLNSKANCEKITKIMFDTFKTPVMDIATQA |
Parental | VLSLYASGRTTGIVMDSGDGVTHTVPIYEGYALPHAILRLDLAGRDLTDYLMKILTERGYSFTTTAEREI |
VLSLYASG..TGI...S.DGV.HTV.IYE..ALPHAIL.LDLA..DLTDYL.KILTE.G.SFTT.A.REI | |
Retrocopy | VLSLYASGHITGIITNSRDGVIHTVNIYEN*ALPHAILCLDLASCDLTDYLIKILTECG*SFTTKAKREI |
Parental | VRDIKEKLCYVAL |
V..IKEKL.YV.L | |
Retrocopy | VSNIKEKLWYVIL |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .00 RPM | 855 .93 RPM |
SRP017611_kidney | 0 .00 RPM | 1102 .49 RPM |
SRP017611_liver | 0 .00 RPM | 363 .62 RPM |