RetrogeneDB ID: | retro_tbel_2268 | ||
Retrocopylocation | Organism: | Treeshrew (Tupaia belangeri) | |
Coordinates: | scaffold_108110:3265..3531(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | ARPC3 | ||
Ensembl ID: | ENSTBEG00000011219 | ||
Aliases: | None | ||
Description: | actin related protein 2/3 complex, subunit 3, 21kDa [Source:HGNC Symbol;Acc:706] |
Percent Identity: | 60.42 % |
Parental protein coverage: | 95.88 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 3 |
Parental | RTLIYITLYISECLKKLQKCNSKSQGEKEMYTLGITNFP-IPGEPGFPLNAIYAKPANKQEDEVMRAYLQ |
..L.YI.LY......KL.....K.QGE......GI.NFP.IPGEP.F..NAIYA.PAN.QED.VMRAYLQ | |
Retrocopy | KDLVYILLYF-QVRVKLER-PFKAQGEERLP--GIPNFP<IPGEPVFSPNAIYAIPANYQEDKVMRAYLQ |
Parental | QLRQET-GLRLCEKVFD-PQNDKPSK |
QLRQ.T.GLRL.EKV.D.PQN...SK | |
Retrocopy | QLRQVT>GLRLWEKVLD<PQNA*HSK |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Callithrix jacchus | ENSCJAG00000009360 | 1 retrocopy | |
Dasypus novemcinctus | ENSDNOG00000004987 | 2 retrocopies | |
Dipodomys ordii | ENSDORG00000008212 | 1 retrocopy | |
Erinaceus europaeus | ENSEEUG00000011531 | 2 retrocopies | |
Felis catus | ENSFCAG00000004132 | 2 retrocopies | |
Macaca mulatta | ENSMMUG00000006492 | 3 retrocopies | |
Monodelphis domestica | ENSMODG00000011628 | 1 retrocopy | |
Oryctolagus cuniculus | ENSOCUG00000011908 | 1 retrocopy | |
Oreochromis niloticus | ENSONIG00000003785 | 1 retrocopy | |
Procavia capensis | ENSPCAG00000011858 | 2 retrocopies | |
Pongo abelii | ENSPPYG00000004947 | 6 retrocopies | |
Sarcophilus harrisii | ENSSHAG00000014805 | 3 retrocopies | |
Tupaia belangeri | ENSTBEG00000011219 | 1 retrocopy |
retro_tbel_2268 ,
|
Tarsius syrichta | ENSTSYG00000002953 | 4 retrocopies |