RetrogeneDB ID:

retro_ttru_512

Retrocopy
location
Organism:Dolphin (Tursiops truncatus)
Coordinates:GeneScaffold_2546:550210..550666(-)
Located in intron of:ENSTTRG00000012755
Retrocopy
information
Ensembl ID:None
Aliases:None
Status:NOVEL
Parental gene
information
Parental gene summary:
Parental gene symbol:RPS4X
Ensembl ID:ENSTTRG00000006164
Aliases:None
Description:ribosomal protein S4, X-linked [Source:HGNC Symbol;Acc:10424]


Retrocopy-Parental alignment summary:






>retro_ttru_512
AGGAACAGACTTAAGTATGCCCTAACAGGAGATGAAGTAAAGAAGATATGCATGCAGCGTTCCATTAAGATTGATGGCAA
GGTCCTCACTGATATAACCTACCCTGCTGGTTTTATGGATGTCATCAGCATTGACAAGACTGGAGAGAATTTTCTTCTGA
TCTATGACACCAAGGTCCGCTTTGCTGTTCATCGTATTACACCTGAGGAGGCCAAGTATAAGTTGTGCAAAGTGAGAAAG
ATCTTTGCGGAGACAAAAGGAATCCCTCATCTGGTGACCCATGATGCTCGCACCATCTGCTACCATGATCCCCTCATCCA
GGTGAATGACACCATTCAAACTGATTTGGGGACTGGCAAGATTACTGATTTCATCAAATTTGACACTGGTAACCTGTGCA
CGGTGACTGGAGGTGCTAACCTGGGAAGAACTGGTGTGATCAATAACCGGGAGAGA

ORF - retro_ttru_512 Open Reading Frame is conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: 90.79 %
Parental protein coverage: 76. %
Number of stop codons detected: 0
Number of frameshifts detected 0


Retrocopy - Parental Gene Alignment:

ParentalRNRLKYALTGDEVKKICMQRFIKIDGKVRTDITYPAGFMDVISIDKTGENFRLIYDTKGRFAVHRITPEE
RNRLKYALTGDEVKKICMQR.IKIDGKV.TDITYPAGFMDVISIDKTGENF.LIYDTK.RFAVHRITPEE
RetrocopyRNRLKYALTGDEVKKICMQRSIKIDGKVLTDITYPAGFMDVISIDKTGENFLLIYDTKVRFAVHRITPEE
ParentalAKYKLCKVRKIFVGTKGIPHLVTHDARTIRYPDPLIKVNDTIQIDLETGKITDFIKFDTGNLCMVTGGAN
AKYKLCKVRKIF..TKGIPHLVTHDARTI.Y.DPLI.VNDTIQ.DL.TGKITDFIKFDTGNLC.VTGGAN
RetrocopyAKYKLCKVRKIFAETKGIPHLVTHDARTICYHDPLIQVNDTIQTDLGTGKITDFIKFDTGNLCTVTGGAN
ParentalLGRIGVITNRER
LGR.GVI.NRER
RetrocopyLGRTGVINNRER

Legend:
*Stop codon
>Forward frameshift by one nucleotide
<Reverse frameshift by one nucleotide






Tursiops truncatus was not studied using RNA-Seq expression data.
Tursiops truncatus was not studied using ChIP-Seq data.
No EST(s) were mapped for retro_ttru_512 retrocopy.
Tursiops truncatus was not studied using FANTOM5 data.
retro_ttru_512 was not experimentally validated.

Retrocopy orthology:
Tursiops truncatus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

Parental genes homology:
Parental genes homology involve 13 parental genes, and 73 retrocopies.

Species Parental gene accession Retrocopies number
Anolis carolinensis ENSACAG000000146011 retrocopy
Ailuropoda melanoleuca ENSAMEG0000000580514 retrocopies
Cavia porcellus ENSCPOG000000063373 retrocopies
Equus caballus ENSECAG000000108526 retrocopies
Homo sapiens ENSG000001298241 retrocopy
Gorilla gorilla ENSGGOG0000002307918 retrocopies
Meleagris gallopavo ENSMGAG000000096711 retrocopy
Monodelphis domestica ENSMODG000000110701 retrocopy
Mustela putorius furoENSMPUG0000000529411 retrocopies
Otolemur garnettii ENSOGAG000000118082 retrocopies
Pan troglodytes ENSPTRG000000224701 retrocopy
Rattus norvegicus ENSRNOG000000032011 retrocopy
Tursiops truncatus ENSTTRG00000006164 13 retrocopies



Copyright © RetrogeneDB 2014-2017