RetrogeneDB ID:

retro_ggor_711

Retrocopy
location
Organism:Gorilla (Gorilla gorilla)
Coordinates:11:54294148..54294734(-)
Located in intron of:None
Retrocopy
information
Ensembl ID:ENSGGOG00000028424
Aliases:None
Status:KNOWN_PSEUDOGENE
Parental gene
information
Parental gene summary:
Parental gene symbol:ENSG00000198034
Ensembl ID:ENSGGOG00000023079
Aliases:None
Description:None


Retrocopy-Parental alignment summary:






>retro_ggor_711
CTTTCCGTGCCTAATGCAGCCATGGCTCATGGTCCCAAGAAGCATCTGAACCACTACAGCAACTCCAAAACATTGGATGC
TGCATAAATTGATCAGTGTGTTTGCTCCTTGTCTATCCACCAGTGTCCACAAGTTGAGAGAGTGTCTCCCCTTCATCATT
TTCCTAAGGAACAGACTTAAGTATGCCCTGACAGGAGATGAAGTAAAGATTTGCATGCAGCCGTTCATTAAGATCGATGG
CAAGGTCAGAACTGATATAACTACCCTGCTGGATTCATGGATGTCATCAGCATTGGCAAGACAGGAGGGAATTTCTGTCT
GATCTATGACACCAAGGGTTGCTTTGCTGTACATCATATTACACCTGAGGAGGCCAAGTACAAGTGGTGCAAAGTGAGAA
AAATCTTTGTGGACACCAAAGGAATCCCTCATCTGGGGACTCATGATGCTCGCACCATCTGCTACCCTGATCCCCTCATC
AAGGTGAATGATACCATTCAGATTGATTTGGAGACTGGCAAGATTACTGATTTCATCAAGTTCAACAACTGGTAACCTGT
GTATGGTGACTGGAGGTGCTAACCTG

ORF - retro_ggor_711 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: 84.92 %
Parental protein coverage: 69.89 %
Number of stop codons detected: 0
Number of frameshifts detected 3


Retrocopy - Parental Gene Alignment:

ParentalLSLPNAAMARGPKKHLKR-VAAPKHWMLDKLTGVFAPRPSTGPHKLRECLPHI-FLRNRLKYALTGDEVK
LS.PNAAMA.GPKKHL....A.PKHWML.KL..VFAP..ST..HKLRECLP.I.FLRNRLKYALTGDEVK
RetrocopyLSVPNAAMAHGPKKHLNH>TATPKHWMLHKLISVFAPCLSTSVHKLRECLPFIIFLRNRLKYALTGDEVK
ParentalKICMQRFIKIDGKVRTDIT-YPAGFMDVISIDKTGENFRLIYDTKGRFAVHRITPEEAKYKLCKVRKIFV
.ICMQ.FIKIDGKVRTDIT.YPAGFMDVISI.KTG.NF.LIYDTKG.FAVH.ITPEEAKYK.CKVRKIFV
Retrocopy-ICMQPFIKIDGKVRTDIT<YPAGFMDVISIGKTGGNFCLIYDTKGCFAVHHITPEEAKYKWCKVRKIFV
ParentalGTKGIPHLVTHDARTIRYPDPLIKVNDTIQIDLETGKITDFIKFD-TGNLCMVTGGANL
.TKGIPHL.THDARTI.YPDPLIKVNDTIQIDLETGKITDFIKF..TGNLCMVTGGANL
RetrocopyDTKGIPHLGTHDARTICYPDPLIKVNDTIQIDLETGKITDFIKFN>TGNLCMVTGGANL

Legend:
*Stop codon
>Forward frameshift by one nucleotide
<Reverse frameshift by one nucleotide






(Hint: click retrocopy or parental gene accession number on the plot's legend, to show / hide expression level values)

Expression validation based on RNA-Seq data:
Library Retrocopy expression Parental gene expression
SRP007412_brain_prefrontal_cortex 0 .10 RPM 180 .31 RPM
SRP007412_cerebellum 0 .04 RPM 166 .34 RPM
SRP007412_heart 0 .03 RPM 106 .88 RPM
SRP007412_kidney 0 .04 RPM 528 .04 RPM
SRP007412_liver 0 .03 RPM 355 .23 RPM
SRP007412_testis 0 .41 RPM 194 .66 RPM
Gorilla gorilla was not studied using ChIP-Seq data.
Gorilla gorilla was not studied using EST data.
Gorilla gorilla was not studied using FANTOM5 data.
retro_ggor_711 was not experimentally validated.

Retrocopy orthology:
Retrocopy retro_ggor_711 has 3 orthologous retrocopies within eutheria group .

Species RetrogeneDB ID
Homo sapiens retro_hsap_875
Pan troglodytes retro_ptro_3032
Pongo abelii retro_pabe_679

Parental genes homology:
Parental genes homology involve 18 parental genes, and 125 retrocopies.

Species Parental gene accession Retrocopies number
Anolis carolinensis ENSACAG000000146011 retrocopy
Ailuropoda melanoleuca ENSAMEG0000000580514 retrocopies
Cavia porcellus ENSCPOG000000063373 retrocopies
Equus caballus ENSECAG000000108526 retrocopies
Homo sapiens ENSG000001298241 retrocopy
Gorilla gorilla ENSGGOG00000023079 18 retrocopies
Loxodonta africana ENSLAFG000000026544 retrocopies
Macropus eugenii ENSMEUG0000000796916 retrocopies
Meleagris gallopavo ENSMGAG000000096711 retrocopy
Monodelphis domestica ENSMODG000000110701 retrocopy
Mustela putorius furoENSMPUG0000000529411 retrocopies
Otolemur garnettii ENSOGAG000000118082 retrocopies
Procavia capensis ENSPCAG000000007613 retrocopies
Pan troglodytes ENSPTRG000000224701 retrocopy
Pteropus vampyrus ENSPVAG0000001288221 retrocopies
Rattus norvegicus ENSRNOG000000032011 retrocopy
Ictidomys tridecemlineatus ENSSTOG000000286928 retrocopies
Tursiops truncatus ENSTTRG0000000616413 retrocopies



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