RetrogeneDB ID: | retro_ggor_939 | ||
Retrocopylocation | Organism: | Gorilla (Gorilla gorilla) | |
Coordinates: | 13:33736415..33737235(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | ENSG00000198034 | ||
Ensembl ID: | ENSGGOG00000023079 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 87.64 % |
Parental protein coverage: | 98.21 % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 1 |
Parental | LSLPNAAMARGPKKHLKRVAAPKHWMLDKLTGVFAPRPSTGPHKLRECLPH-IFLRNRLKYALTGDEVKK |
LSLPNAAMA.GP.KHLKRVAAPKHWMLD.LT..FAP.PST.PHKLR...PH.IFLRNRLKYA..GDEVKK | |
Retrocopy | LSLPNAAMACGPRKHLKRVAAPKHWMLDQLTSMFAPCPSTSPHKLRVSSPH>IFLRNRLKYAVKGDEVKK |
Parental | ICMQRFIKIDGKVRTDITYPAGFMDVISIDKTGENFRLIYDTKGRFAVHRITPEEAKYKLCKVRKIFVGT |
ICMQRFIKIDGKV.TDITYPAGFM.VISIDKT.ENF.LIYDTK..FAVH.ITPEEAKYKLCKVRKIF.GT | |
Retrocopy | ICMQRFIKIDGKV*TDITYPAGFMEVISIDKTEENFCLIYDTKSLFAVHHITPEEAKYKLCKVRKIFLGT |
Parental | KGIPHLVTHDARTIRYPDPLIKVNDTIQIDLETGKITDFIKFDTGNLCMVTGGANLGRIGVITNRERHPG |
KGIPHLVTHD.RT..YPDPLIKVNDT.QIDLETGKITDFIKFDTG.LCMVTGGANLGRIGVITNRERHPG | |
Retrocopy | KGIPHLVTHDGRTVCYPDPLIKVNDTFQIDLETGKITDFIKFDTGHLCMVTGGANLGRIGVITNRERHPG |
Parental | SFDVVHVKDANGNSFATRLSNIFVIGKGNKPWISLPRGKGIRLTIAEERDKRLRPNRAVGEMVPG |
SFD.VH..DANGNSFAT.LSNIFVIGKGNK.WISLP.GKGI.LTIAEERDKRL.PNRAVGEMVPG | |
Retrocopy | SFDIVHMEDANGNSFATQLSNIFVIGKGNKLWISLP*GKGICLTIAEERDKRL-PNRAVGEMVPG |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain_prefrontal_cortex | 0 .19 RPM | 180 .31 RPM |
SRP007412_cerebellum | 0 .98 RPM | 166 .34 RPM |
SRP007412_heart | 0 .16 RPM | 106 .88 RPM |
SRP007412_kidney | 0 .82 RPM | 528 .04 RPM |
SRP007412_liver | 0 .63 RPM | 355 .23 RPM |
SRP007412_testis | 0 .93 RPM | 194 .66 RPM |
Species | RetrogeneDB ID |
---|---|
Homo sapiens | retro_hsap_1204 |
Pongo abelii | retro_pabe_1005 |