RetrogeneDB ID: | retro_ggor_895 | ||
Retrocopylocation | Organism: | Gorilla (Gorilla gorilla) | |
Coordinates: | 12:99264732..99265565(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | ENSG00000198034 | ||
Ensembl ID: | ENSGGOG00000023079 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 85.77 % |
Parental protein coverage: | 99.28 % |
Number of stop codons detected: | 3 |
Number of frameshifts detected | 3 |
Parental | DGGPLSLPNAAMARGPKKHLKRVAAPKHWMLDKLTGVFAPRPSTGP-HKLRECLPHI-FLRNRLKYALTG |
.GGPLSL.NAAM...PKKHLK.VAAPKHWMLDKLT.VFAPRPSTGP.HKLR.CL..I.FLRNRLKYA.TG | |
Retrocopy | NGGPLSLLNAAMTCDPKKHLKGVAAPKHWMLDKLTSVFAPRPSTGP<HKLRVCLSLIIFLRNRLKYARTG |
Parental | DEVKKICMQRFIKIDGKVRTDITYPAGFMDVISIDKTGENFRLIYDTKGRFAVHRITPEEAKYKLCKVRK |
DEV.KIC.Q.FIKIDGKVRTDITYPAGFMDVIS.DKTGENF.LI.DTKGRFAVH.ITPEEAKYKLCKVRK | |
Retrocopy | DEVRKICVQQFIKIDGKVRTDITYPAGFMDVISVDKTGENFHLIRDTKGRFAVHHITPEEAKYKLCKVRK |
Parental | IFVGTKGIPHLVTHDARTIRYPDPLIKVNDTIQIDLETGKITDFIKFD-TGNLCMVTGGANLGRIGVITN |
IFVGTKGI..LVTHDARTI.YPDPLIKVNDTI..DLETGKIT.F.....TGNLCMVT.GANL.RIGVITN | |
Retrocopy | IFVGTKGISRLVTHDARTIHYPDPLIKVNDTIHVDLETGKIT*FHQVT<TGNLCMVTEGANL*RIGVITN |
Parental | RERHPGSFDVVHVKDANGNSFATRLSNIFVIGKGNKPWISLPRGKGIRLTIAEERDKRL-RPNRAVGEMV |
RERHPGSFDV.HVKDANG.SFAT.LSNIFVIGKGNKPWISLP.GKGIRLTIAEERDKRL..PNRA.GEMV | |
Retrocopy | RERHPGSFDVFHVKDANGHSFATQLSNIFVIGKGNKPWISLP*GKGIRLTIAEERDKRL>WPNRALGEMV |
Parental | P |
P | |
Retrocopy | P |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain_prefrontal_cortex | 0 .14 RPM | 180 .31 RPM |
SRP007412_cerebellum | 0 .12 RPM | 166 .34 RPM |
SRP007412_heart | 0 .09 RPM | 106 .88 RPM |
SRP007412_kidney | 0 .12 RPM | 528 .04 RPM |
SRP007412_liver | 0 .11 RPM | 355 .23 RPM |
SRP007412_testis | 0 .00 RPM | 194 .66 RPM |
Species | RetrogeneDB ID |
---|---|
Homo sapiens | retro_hsap_1151 |
Pan troglodytes | retro_ptro_784 |
Pongo abelii | retro_pabe_954 |