RetrogeneDB ID: | retro_ggor_1689 | ||
Retrocopylocation | Organism: | Gorilla (Gorilla gorilla) | |
Coordinates: | 2a:64837478..64838284(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | ENSG00000198034 | ||
Ensembl ID: | ENSGGOG00000023079 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 78.78 % |
Parental protein coverage: | 97.49 % |
Number of stop codons detected: | 3 |
Number of frameshifts detected | 5 |
Parental | LSLPNAAMAR-GPKKHLKRVAAPKHWMLDKLTGVFAPRPSTGPHKLRECLPHI-FLRNRLKYALTGDEVK |
LS.P...MA..GPKKHLK.V.APKHWMLDKL.GVF.PRPSTG.HKLR..LP.I.FLRNRLKYALTGDEVK | |
Retrocopy | LSMPSTTMAL<GPKKHLK*VPAPKHWMLDKLIGVFTPRPSTGSHKLRKFLPVIIFLRNRLKYALTGDEVK |
Parental | KICMQRFIKIDGKVRTDITYPA-GFMDVISIDKTGENFRLIYDTKGRFAVHRITPEEAKYKLCKVRKIFV |
KICMQ.FIKI.GKV.TD.TYPA.GFMDVISIDKTGEN.RLIYDTKG..AVH.IT.EEAKYKLCKVRKIFV | |
Retrocopy | KICMQWFIKISGKVQTDVTYPA>GFMDVISIDKTGENVRLIYDTKGHSAVHHITSEEAKYKLCKVRKIFV |
Parental | -GTKGIPHLVTHDARTIRYPDPLIKVNDT-IQIDLETGKITDFIKFDTGNLCMVTGG-ANLGRIGVITNR |
.GTKGIPHLV.HD..TI.YPDPLIKV....IQI.LETGKITDFIKF..GNLCMVT.G.ANLGRI.....R | |
Retrocopy | <GTKGIPHLVIHDVHTIHYPDPLIKVSNR<IQIGLETGKITDFIKFNIGNLCMVTEG>ANLGRI----TR |
Parental | ERHPGSFDVVHVKDANGNSFATRLSNIFVIGKGNKPWISLPRGKGIRLTIAEERDKRLRPNRAVGEMV |
ERHPGSF.VVHVKDA.GN.F.T.LSNIFVIGK.NKP..S.P.GKGI.LTIAEERD.RL..NR.VGEMV | |
Retrocopy | ERHPGSFHVVHVKDASGNRFVTHLSNIFVIGKSNKP*TSPP*GKGICLTIAEERDERLAGNREVGEMV |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain_prefrontal_cortex | 0 .14 RPM | 180 .31 RPM |
SRP007412_cerebellum | 0 .00 RPM | 166 .34 RPM |
SRP007412_heart | 0 .06 RPM | 106 .88 RPM |
SRP007412_kidney | 0 .12 RPM | 528 .04 RPM |
SRP007412_liver | 0 .26 RPM | 355 .23 RPM |
SRP007412_testis | 0 .10 RPM | 194 .66 RPM |
Species | RetrogeneDB ID |
---|---|
Pongo abelii | retro_pabe_1948 |