RetrogeneDB ID: | retro_ggor_1319 | ||
Retrocopylocation | Organism: | Gorilla (Gorilla gorilla) | |
Coordinates: | 17:533478..533924(-) | ||
Located in intron of: | ENSGGOG00000010585 | ||
Retrocopyinformation | Ensembl ID: | ENSGGOG00000023596 | |
Aliases: | None | ||
Status: | KNOWN_PSEUDOGENE | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | ENSG00000198034 | ||
Ensembl ID: | ENSGGOG00000023079 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 87.33 % |
Parental protein coverage: | 56.65 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 1 |
Parental | TPEEAKYKLCKVRKIFVGTKGIPHLVTHDARTIRYPDP-LIKVNDTIQIDLETGKITDFIKFDTGNLCMV |
TPEEAKYKLCKVRKIF.GTKGIPHLVTHDARTIRYPDP.LIKVNDT.QIDLETGK.TDFI.FDTG...MV | |
Retrocopy | TPEEAKYKLCKVRKIFLGTKGIPHLVTHDARTIRYPDP<LIKVNDTVQIDLETGKMTDFITFDTGKPYMV |
Parental | TGGANLGRIGVITNRERHPGSFDVVHVKDANGNSFATRLSNIFVIGKGNKPWISLPRGKGIRLTIAEERD |
TGGA.LGR.GVI.NRER.PGSFDVVHVKD..GNSF.TR.SNIF.IGKGNK.WISLPRGKGIRLTIAEERD | |
Retrocopy | TGGAHLGRVGVIPNRERYPGSFDVVHVKDTSGNSFGTRVSNIFTIGKGNKRWISLPRGKGIRLTIAEERD |
Parental | KRLAAKQSSG |
KRL.AKQSSG | |
Retrocopy | KRLVAKQSSG |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain_prefrontal_cortex | 0 .00 RPM | 180 .31 RPM |
SRP007412_cerebellum | 0 .12 RPM | 166 .34 RPM |
SRP007412_heart | 0 .00 RPM | 106 .88 RPM |
SRP007412_kidney | 0 .16 RPM | 528 .04 RPM |
SRP007412_liver | 0 .11 RPM | 355 .23 RPM |
SRP007412_testis | 0 .10 RPM | 194 .66 RPM |
Species | RetrogeneDB ID |
---|---|
Homo sapiens | retro_hsap_1792 |
Pongo abelii | retro_pabe_1472 |