RetrogeneDB ID: | retro_ggor_572 | ||
Retrocopylocation | Organism: | Gorilla (Gorilla gorilla) | |
Coordinates: | 10:35448117..35448763(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | ENSG00000198034 | ||
Ensembl ID: | ENSGGOG00000023079 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 85.19 % |
Parental protein coverage: | 77.06 % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 1 |
Parental | YALTGDEVKKICMQRFIKIDGKVRTDITYPAGFMDVISIDKTGENFRLIYDTKGRFAVHRITPEEAKYKL |
...T....KKI.MQ.FIKI.GKV.TDITYPAGFM.VISIDK..ENF.LIYDTK..F.VH.ITPE.AKYKL | |
Retrocopy | FSMT*QVRKKIYMQQFIKINGKV*TDITYPAGFMGVISIDKMRENFCLIYDTKSCFDVHLITPEVAKYKL |
Parental | CKVRKIFVGTKGIPHLVTHDARTIRYPDPLIKVNDTIQIDLETGKITDFIKFDTGNLCMVTGGANLGRIG |
CKVRKIFVGTKG.P.LVTHDA.TI.Y.DPLIKVNDTIQIDLETGKITDFIKFD.G.LC.VTGGANL.RIG | |
Retrocopy | CKVRKIFVGTKGVPNLVTHDAHTIHYLDPLIKVNDTIQIDLETGKITDFIKFDAGKLCVVTGGANLERIG |
Parental | VITNRERHPGSFDVVHVKDANGNSFATRLSNIFVIGKGNKPWISLPRGKGIRLTIAEERDKRL-RPNRAV |
VITNRERHPGSFDVVHVKDANGNSFA.RLSNIFVIGKGNKPWISLPRGKGIRLTIAEERDKRL.RPNRAV | |
Retrocopy | VITNRERHPGSFDVVHVKDANGNSFAARLSNIFVIGKGNKPWISLPRGKGIRLTIAEERDKRL>RPNRAV |
Parental | GEMVPG |
GE.VPG | |
Retrocopy | GEIVPG |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain_prefrontal_cortex | 0 .05 RPM | 180 .31 RPM |
SRP007412_cerebellum | 0 .00 RPM | 166 .34 RPM |
SRP007412_heart | 0 .00 RPM | 106 .88 RPM |
SRP007412_kidney | 0 .08 RPM | 528 .04 RPM |
SRP007412_liver | 0 .11 RPM | 355 .23 RPM |
SRP007412_testis | 0 .00 RPM | 194 .66 RPM |
Species | RetrogeneDB ID |
---|---|
Homo sapiens | retro_hsap_656 |
Pongo abelii | retro_pabe_579 |