RetrogeneDB ID: | retro_ggor_1278 | ||
Retrocopylocation | Organism: | Gorilla (Gorilla gorilla) | |
Coordinates: | 16:65563792..65564561(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSGGOG00000024358 | |
Aliases: | None | ||
Status: | KNOWN_PSEUDOGENE | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | ENSG00000198034 | ||
Ensembl ID: | ENSGGOG00000023079 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 73.56 % |
Parental protein coverage: | 98.48 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 2 |
Parental | ARGPKKHLKRVAAPKHWMLDKLTGVFAPRPSTGPHKLRECLPLIIFLRNRLKYALTGDEVKKICMQRFIK |
A.GPKKHLKRVA.PKHWMLDKL.G.FAPRPSTGPHKLRECLPLI.FLRNRLKYALTGD.VK.ICMQ.FIK | |
Retrocopy | AWGPKKHLKRVAVPKHWMLDKLKGIFAPRPSTGPHKLRECLPLIVFLRNRLKYALTGDGVKEICMQCFIK |
Parental | IDGKVRTDITYPAGFMDVISIDKTGENFRLIYD-TKGRFAVHRITPEEAKYKLCKVRKIFVGTKGIPHLV |
IDGKV...ITYPAGF.DV..I.KTGE.F.L..D..KG.FAV...T.EEAKY.LCKVRK...G.KGI..LV | |
Retrocopy | IDGKVPVAITYPAGFTDVTGI-KTGEHFCLVCD<PKGCFAVDCVTVEEAKYNLCKVRKVTMGMKGIHRLV |
Parental | THDARTIRYPDPLIKVNDTIQIDLETGKITDFIKFDTGNLCMVTGGANLGRIGVITNRERHPGS-FDVVH |
THD..TI.YPDP.IKVN.T..IDL.TGKI..FIK..TGN.CMV..GA.L...GV.TNRE.HPGS...VVH | |
Retrocopy | THDTGTIHYPDPVIKVNNTVHIDLGTGKIINFIKLHTGNACMVI-GASLSHVGVTTNREGHPGS<LNVVH |
Parental | VKDANGNSFATRLSNIFVIGKGNKPWISLPRGKGIRLTIAEERDKRLAAKQ |
V.DA.GNSFA.RLSNIFV.G.G.KPWISLPR.KG.RLTIAE.R..RLA.KQ | |
Retrocopy | VRDAIGNSFALRLSNIFVTGNGSKPWISLPREKGTRLTIAEKREQRLATKQ |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain_prefrontal_cortex | 0 .00 RPM | 180 .31 RPM |
SRP007412_cerebellum | 7 .84 RPM | 166 .34 RPM |
SRP007412_heart | 7 .22 RPM | 106 .88 RPM |
SRP007412_kidney | 47 .80 RPM | 528 .04 RPM |
SRP007412_liver | 29 .39 RPM | 355 .23 RPM |
SRP007412_testis | 47 .03 RPM | 194 .66 RPM |
Species | RetrogeneDB ID |
---|---|
Homo sapiens | retro_hsap_1704 |
Pan troglodytes | retro_ptro_1153 |
Pongo abelii | retro_pabe_1401 |