RetrogeneDB ID: | retro_ggor_1367 | ||
Retrocopylocation | Organism: | Gorilla (Gorilla gorilla) | |
Coordinates: | 18:9096288..9096925(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | ENSG00000198034 | ||
Ensembl ID: | ENSGGOG00000023079 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 81.4 % |
Parental protein coverage: | 80.99 % |
Number of stop codons detected: | 4 |
Number of frameshifts detected | 2 |
Parental | GPKKHLKRVAAPKHWMLDKLTGVFAPRPSTGPHKLRECLPLI-IFLRNRLKYA-LTGDEVKKICMQRFIK |
GPKKHLK..AAP.H.MLDKLT.VFAP..ST.PHKLRECL.LI..FL.NRLK....T.DEVKKICM..FIK | |
Retrocopy | GPKKHLKWAAAP*HLMLDKLTCVFAPH*STHPHKLRECLSLI<LFLKNRLKNV<RT*DEVKKICMHSFIK |
Parental | IDGKVRTDITYPAGFMDVISIDKTGENFRLIYDTKGRFAVHRITPEEAKYKLCKVRKIFVGTKGIPHLVT |
I.GKV.T..TYPAGFMDV.S.DKTGENF.LIYDTK..FAVHRI.PEEAKY.LCKVRKIFV.TKGIPHL.T | |
Retrocopy | INGKV*TNVTYPAGFMDVMSTDKTGENFYLIYDTKAPFAVHRIAPEEAKYRLCKVRKIFVDTKGIPHLLT |
Parental | HDARTIRYPDPLIKVNDTIQIDLETGKITDFIKFDTGNLCMVTGGANLGRIGVITNRERHPGSFDVVHVK |
HDA.TI.YPDPLIKVNDTIQ.DLE.GKIT.FIKF.TGNLCMVTGGANLGRIGVITNRERHPGSFDVVH.K | |
Retrocopy | HDAHTICYPDPLIKVNDTIQVDLENGKITGFIKFNTGNLCMVTGGANLGRIGVITNRERHPGSFDVVHGK |
Parental | DANGN |
DAN.N | |
Retrocopy | DANSN |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain_prefrontal_cortex | 0 .00 RPM | 180 .31 RPM |
SRP007412_cerebellum | 0 .00 RPM | 166 .34 RPM |
SRP007412_heart | 0 .00 RPM | 106 .88 RPM |
SRP007412_kidney | 0 .00 RPM | 528 .04 RPM |
SRP007412_liver | 0 .03 RPM | 355 .23 RPM |
SRP007412_testis | 0 .00 RPM | 194 .66 RPM |
Species | RetrogeneDB ID |
---|---|
Homo sapiens | retro_hsap_1868 |
Pan troglodytes | retro_ptro_1280 |
Pongo abelii | retro_pabe_1586 |