Parental gene:

RBBP4, ENSBTAG00000005904

Aliases:None
Description:Histone-binding protein RBBP4 [Source:UniProtKB/Swiss-Prot;Acc:Q3MHL3]
Organism:Cow (Bos taurus)
Coordinates:2:121800922..121817395(-)


>ENSBTAG00000005904
ATGGCCGACAAGGAAGCAGCCTTTGATGACGCAGTAGAGGAACGTGTGATCAACGAAGAATACAAAATATGGAAAAAGAA
CACCCCTTTTCTTTACGATTTGGTGATGACCCATGCTCTGGAGTGGCCTAGCCTAACTGCACAGTGGCTTCCAGATGTAA
CCAGACCAGAAGGGAAAGATTTCAGTATTCATCGACTTGTCCTGGGGACACACACATCAGATGAGCAAAACCACCTTGTG
ATAGCCAGCGTGCAGCTCCCTAACGATGACGCTCAGTTTGATGCTTCACACTACGACAGTGAAAAAGGAGAATTTGGAGG
TTTTGGCTCGGTTAGTGGAAAAATTGAAATAGAAATCAAGATCAACCATGAAGGAGAGGTAAACAGGGCACGCTATATGC
CCCAGAACCCTTGCATCATTGCAACCAAGACTCCATCCAGTGATGTTCTTGTTTTTGACTATACAAAACATCCTTCTAAA
CCAGACCCTTCTGGAGAGTGCAACCCAGACTTGCGTCTCCGTGGACATCAGAAGGAAGGCTATGGGCTTTCTTGGAACCC
AAATCTCAGTGGGCACTTACTGAGTGCTTCAGATGACCACACCATCTGCCTGTGGGACATAAGTGCTGTTCCAAAGGAAG
GGAAAGTTGTGGATGCGAAGACCATCTTCACAGGGCACACGGCAGTAGTGGAGGATGTCTCCTGGCATCTGCTCCATGAG
TCCCTCTTTGGGTCGGTTGCTGATGATCAGAAACTCATGATCTGGGATACTCGTTCAAACAATACTTCCAAACCAAGCCA
CTCAGTTGATGCTCACACTGCTGAAGTGAACTGCCTTTCTTTCAATCCTTATAGTGAGTTCATTCTTGCCACAGGATCAG
CTGACAAGACTGTTGCCCTGTGGGATCTGAGAAATCTGAAACTTAAGTTGCATTCCTTTGAATCACATAAGGATGAAATA
TTCCAGGTTCAGTGGTCGCCTCACAATGAGACTATTTTGGCTTCCAGTGGTACTGATCGTAGACTGAATGTCTGGGATTT
AAGTAAAATTGGAGAGGAACAATCCCCAGAAGATGCAGAAGATGGGCCACCAGAGTTGTTGTTTATTCATGGTGGTCACA
CTGCCAAGATATCTGATTTCTCCTGGAATCCCAACGAACCTTGGGTGATTTGTTCTGTATCAGAAGACAATATCATGCAA
GTGTGGCAAATGGCTGAGAACATTTATAATGATGAAGACCCTGAAGGAAGCGTGGATCCAGAAGGACAAGGATCTTAG

Library Parental gene expression (RPM)
SRP017611_brain 90 .45 RPM
SRP017611_kidney 118 .01 RPM
SRP017611_liver 62 .67 RPM
ERP005899_muscle 96 .97 RPM
ERP005899_liver 77 .36 RPM
SRP030211_testis 368 .11 RPM



Species Parental gene accession Homology type Retrogenes number
Bos taurus ENSBTAG00000002820 within_species_paralog 1 retrogene
retro_btau_1579,
Canis familiaris ENSCAFG00000010527 ortholog_one2one 1 retrogene
retro_cfam_1550,
Choloepus hoffmanni ENSCHOG00000004066 ortholog_one2one 6 retrogenes
retro_chof_1382, retro_chof_1649, retro_chof_1867, retro_chof_2116, retro_chof_2327, retro_chof_908,
Callithrix jacchus ENSCJAG00000001021 ortholog_one2one 7 retrogenes
retro_cjac_1157, retro_cjac_1787, retro_cjac_1873, retro_cjac_244, retro_cjac_2557, retro_cjac_2719, retro_cjac_2939,
Cavia porcellus ENSCPOG00000015352 ortholog_one2one 3 retrogenes
retro_cpor_154, retro_cpor_27, retro_cpor_899,
Equus caballus ENSECAG00000022784 ortholog_one2one 1 retrogene
retro_ecab_767,
Echinops telfairi ENSETEG00000020008 ortholog_one2one 4 retrogenes
retro_etel_1088, retro_etel_1462, retro_etel_1877, retro_etel_676,
Felis catus ENSFCAG00000027017 ortholog_one2one 1 retrogene
retro_fcat_1507,
Homo sapiens ENSG00000162521 ortholog_one2one 6 retrogenes
retro_hsap_1305, retro_hsap_2675, retro_hsap_2814, retro_hsap_3292, retro_hsap_3600, retro_hsap_3601,
Macropus eugenii ENSMEUG00000014379 ortholog_one2one 1 retrogene
retro_meug_1032,
Myotis lucifugus ENSMLUG00000000749 ortholog_one2one 2 retrogenes
retro_mluc_2275, retro_mluc_892,
Macaca mulatta ENSMMUG00000009940 ortholog_one2one 1 retrogene
retro_mmul_75,
Mustela putorius furo ENSMPUG00000015214 ortholog_one2one 1 retrogene
retro_mputfur_104,
Mus musculus ENSMUSG00000057236 ortholog_one2one 1 retrogene
retro_mmus_356,
Nomascus leucogenys ENSNLEG00000002805 ortholog_one2one 6 retrogenes
retro_nleu_1061, retro_nleu_1179, retro_nleu_1194, retro_nleu_1356, retro_nleu_1379, retro_nleu_2982,
Petromyzon marinus ENSPMAG00000007189 ortholog_one2many 1 retrogene
retro_pmar_26,
Pongo abelii ENSPPYG00000001588 ortholog_one2one 6 retrogenes
retro_pabe_1093, retro_pabe_2210, retro_pabe_2720, retro_pabe_2958, retro_pabe_3529, retro_pabe_3611,
Pteropus vampyrus ENSPVAG00000010981 ortholog_one2one 2 retrogenes
retro_pvam_1094, retro_pvam_902,
Rattus norvegicus ENSRNOG00000021492 ortholog_one2one 1 retrogene
retro_rnor_1270,
Sarcophilus harrisii ENSSHAG00000010923 ortholog_one2one 1 retrogene
retro_shar_399,
Ictidomys tridecemlineatus ENSSTOG00000012011 ortholog_one2one 1 retrogene
retro_itri_1168,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_btau_630 97.88 100.00
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2. retro_btau_1610 88.29 99.76
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Download FASTA sequences of all ENSBTAG00000005904 retrocopies