RetrogeneDB ID: | retro_etel_1462 | ||
Retrocopylocation | Organism: | Lesser hedgehog tenrec (Echinops telfairi) | |
Coordinates: | scaffold_269880:2819..3621(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RBBP4 | ||
Ensembl ID: | ENSETEG00000020008 | ||
Aliases: | None | ||
Description: | retinoblastoma binding protein 4 [Source:HGNC Symbol;Acc:9887] |
Percent Identity: | 92.91 % |
Parental protein coverage: | 62.82 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 1 |
Parental | VLVFDYTKHPSKPDPSGECNPDLRLRGHQKEGYGLSWNPNLSGHLLSASDDHTICLWDISAVPKEGKVVD |
VLVFDY.KHPSKPDP.GECNPDLRLRGHQKEGYGLSWNPNLSGHL.SASDDHTICLW.ISAVPKEGKVVD | |
Retrocopy | VLVFDYKKHPSKPDPFGECNPDLRLRGHQKEGYGLSWNPNLSGHLFSASDDHTICLWEISAVPKEGKVVD |
Parental | AKTIFTGHTAVVEDVSWHLLHESLFGSVADDQKLMIWDTRSNNTSKPSHSVDAHTAEVNCLSFNPYSEFI |
AKTIFTGH.AVVEDVSWHLLHESLFGSVADDQKLMIWD.RSNNTSKPSHSVDAHTAEVNCLSFNPYSEFI | |
Retrocopy | AKTIFTGHIAVVEDVSWHLLHESLFGSVADDQKLMIWDNRSNNTSKPSHSVDAHTAEVNCLSFNPYSEFI |
Parental | LATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLNVWDLSKIGEEQSPED |
LA.GSA.KTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNE.ILASSGTD.RLNVWDL.KIGEEQSPE. | |
Retrocopy | LAIGSAGKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNESILASSGTDCRLNVWDLIKIGEEQSPEY |
Parental | AEDGPPELLFIHGGHTAKISDFSWNPNEPWVICSVSEDNIM-QVWQMAENIYNDEDPE |
AEDGPPELLFIHGGHTAKISD.SWNP.EP.VICSVSE.NI...VWQMAENIYNDEDPE | |
Retrocopy | AEDGPPELLFIHGGHTAKISDISWNPKEP*VICSVSENNIK>EVWQMAENIYNDEDPE |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |