RetrogeneDB ID: | retro_ecab_767 | ||
Retrocopylocation | Organism: | Horse (Equus caballus) | |
Coordinates: | 31:8524959..8526219(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RBBP4 | ||
Ensembl ID: | ENSECAG00000022784 | ||
Aliases: | None | ||
Description: | retinoblastoma binding protein 4 [Source:HGNC Symbol;Acc:9887] |
Percent Identity: | 94.76 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 0 |
Parental | AAFDDAVEERVINEEYKIWKKNTPFLYDLVMTHALEWPSLTAQWLPDVTRPEGKDFSIHRLVLGTHTSDE |
AAFDDAVEERVINEEYK.WKKNTPFLYDLVMTHALEWPSLTAQWLPDVTRPEGKDFSIHRLVLGTHTSDE | |
Retrocopy | AAFDDAVEERVINEEYKMWKKNTPFLYDLVMTHALEWPSLTAQWLPDVTRPEGKDFSIHRLVLGTHTSDE |
Parental | QNHLVIASVQLPNDDAQFDASHYDSEKGEFGGFGSVSGKIEIEIKINHEGEVNRARYMPQNPCIIATKTP |
QNHL.IASVQLPNDDAQFDASHYDSEKGEFGGFGSVSGKIEI.IKINHEGEVNRARYMPQNPCIIATKTP | |
Retrocopy | QNHLLIASVQLPNDDAQFDASHYDSEKGEFGGFGSVSGKIEIQIKINHEGEVNRARYMPQNPCIIATKTP |
Parental | SSDVL-FDYTKHSLAAYPSGECNPDLRLRGHQKEGYGLSWNPNLSGHLLSASDDHTICLWDISAVPKEGK |
SS.VL.FDY.KH.....PSGE.NPDLRLRGHQKEGYGLSWNPNLSGHLLSASDDHTICLWDISAVPKEGK | |
Retrocopy | SSEVLVFDYMKHPSKPDPSGE*NPDLRLRGHQKEGYGLSWNPNLSGHLLSASDDHTICLWDISAVPKEGK |
Parental | VVDAKTIFTGHTAVVEDVSWHLLHESLFGSVADDQKLMIWDTRSNNTSKPSHSVDAHTAEVNCLSFNPYS |
VVDAKTIFTGHTAVVEDVSWHLLHESLFGSVADDQKLMIWDT.SNNTSKPSHSVDAHTAEVNCLSFNPYS | |
Retrocopy | VVDAKTIFTGHTAVVEDVSWHLLHESLFGSVADDQKLMIWDTHSNNTSKPSHSVDAHTAEVNCLSFNPYS |
Parental | EFILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLNVWDLSKIGEEQS |
.FILATGSADKTVALW.LRNLK.KLHSFESHKDEIFQVQ.SPHNETILAS.GTDRRLNVWDLSKIGEE.S | |
Retrocopy | QFILATGSADKTVALWGLRNLKFKLHSFESHKDEIFQVQRSPHNETILASRGTDRRLNVWDLSKIGEE*S |
Parental | PEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWVICSVSEDNIMQVWQMAENIYNDEDPEGSVDPEGQGS |
PEDAEDGP.ELLFIHGGHTAKISDFSWNPNEPWVICSVSEDNI.QVWQMAENIYNDEDPEG.VDPEGQGS | |
Retrocopy | PEDAEDGPAELLFIHGGHTAKISDFSWNPNEPWVICSVSEDNITQVWQMAENIYNDEDPEGGVDPEGQGS |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP021940_articular_cartilage | 4 .90 RPM | 43 .98 RPM |
SRP021940_cerebellum | 5 .14 RPM | 56 .92 RPM |
SRP021940_embryo | 10 .84 RPM | 99 .17 RPM |
SRP021940_placental_villous | 4 .33 RPM | 50 .32 RPM |
SRP021940_synovial_membrane | 4 .45 RPM | 37 .12 RPM |
SRP021940_testis | 7 .35 RPM | 68 .29 RPM |