RetrogeneDB ID: | retro_cfam_1550 | ||
Retrocopylocation | Organism: | Dog (Canis familiaris) | |
Coordinates: | 34:858972..860246(-) | ||
Located in intron of: | ENSCAFG00000009850 | ||
Retrocopyinformation | Ensembl ID: | ENSCAFG00000009894 | |
Aliases: | None | ||
Status: | KNOWN_PSEUDOGENE | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RBBP4 | ||
Ensembl ID: | ENSCAFG00000010527 | ||
Aliases: | None | ||
Description: | retinoblastoma binding protein 4 [Source:HGNC Symbol;Acc:9887] |
Percent Identity: | 98.12 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 1 |
Parental | MADKEAAFDDAVEERVINEEYKIWKKNTPFLYDLVMTHALEWPSLTAQWLPDVTRPEGKDFSIHRLVLGT |
MA.KEAAFDDAVEERVINEEYKIWKKNTPFLYDLVMTHALEWPSLTAQWLPDVTRPEGKDFSIHRLVLGT | |
Retrocopy | MAHKEAAFDDAVEERVINEEYKIWKKNTPFLYDLVMTHALEWPSLTAQWLPDVTRPEGKDFSIHRLVLGT |
Parental | HTSDEQNHLVIASVQL-PNDDAQFDASHYDSEKGEFGGFGSVSGKIEIEIKINHEGEVNRARYMPQNPCI |
HTSDEQNHLVIASVQL.PNDDAQFDASHYDSEKGEFGGFGSVSGKIEIEIKINHEGEVNRARYMPQNPCI | |
Retrocopy | HTSDEQNHLVIASVQL<PNDDAQFDASHYDSEKGEFGGFGSVSGKIEIEIKINHEGEVNRARYMPQNPCI |
Parental | IATKTPSSDVLVFDYTKHPSKPDPSGECNPDLRLRGHQKEGYGLSWNPNLSGHLLSASDDHTICLWDISA |
IA.KTPSSDVLVFDYTKHPSKPD.SGECNPDLRLRGHQKEGYGLSWN.NLSGHLLSASDDHTICLWDISA | |
Retrocopy | IARKTPSSDVLVFDYTKHPSKPDLSGECNPDLRLRGHQKEGYGLSWNLNLSGHLLSASDDHTICLWDISA |
Parental | VPKEGKVVDAKTIFTGHTAVVEDVSWHLLHESLFGSVADDQKLMIWDTRSNNTSKPSHSVDAHTAEVNCL |
VPKEGKVVDAKTIFTGHTAVVEDVSWHLLHESLFGSV.DDQKLMIWDTRSNNTSKPSHSVDAHTAEVNCL | |
Retrocopy | VPKEGKVVDAKTIFTGHTAVVEDVSWHLLHESLFGSVGDDQKLMIWDTRSNNTSKPSHSVDAHTAEVNCL |
Parental | SFNPYSEFILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLNVWDLSK |
SFNPYSEFILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQ.QWSPHNETILASSGTDRRLNVWDLSK | |
Retrocopy | SFNPYSEFILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQIQWSPHNETILASSGTDRRLNVWDLSK |
Parental | IGEEQSPEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWVICSVSEDNIMQVWQMAENIYNDEDPEGSVD |
IGEEQSPEDAEDGPPELLFIHGGH.AKISDFSWNPNEPWVICSVSEDNIMQVWQMAENIYNDEDPEGSVD | |
Retrocopy | IGEEQSPEDAEDGPPELLFIHGGHIAKISDFSWNPNEPWVICSVSEDNIMQVWQMAENIYNDEDPEGSVD |
Parental | PEGQGS |
PEGQGS | |
Retrocopy | PEGQGS |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP012049_cerebellum | 3 .82 RPM | 61 .57 RPM |
SRP017611_brain | 0 .24 RPM | 57 .08 RPM |
SRP017611_kidney | 0 .00 RPM | 77 .13 RPM |
SRP017611_liver | 1 .74 RPM | 20 .59 RPM |