RetrogeneDB ID: | retro_chof_908 | ||
Retrocopylocation | Organism: | Sloth (Choloepus hoffmanni) | |
Coordinates: | scaffold_166823:3348..4030(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RBBP4 | ||
Ensembl ID: | ENSCHOG00000004066 | ||
Aliases: | None | ||
Description: | retinoblastoma binding protein 4 [Source:HGNC Symbol;Acc:9887] |
Percent Identity: | 81.03 % |
Parental protein coverage: | 54.01 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 3 |
Parental | MADKE-AAFDDAVEERVINEEYKIWKKNTPFLYDLVMTHALEWPSLTAQWLPDVTRPEGKDFSIHRLVLG |
MA.KE.AAFDD.VEE.VIN.EYKIWKKN.PFLYD.VMTHA.EWPSLTAQ.LPDV.RP.GKDFSIHR..LG | |
Retrocopy | MANKE>AAFDDSVEECVINKEYKIWKKNPPFLYDFVMTHAQEWPSLTAQ*LPDVIRPKGKDFSIHRPILG |
Parental | THTSDEQNHLVIASVQLPNDDAQFDAS-HYDSEKGEFGGFGSVSGKIEIEIKINHEGEVNRARYMPQNPC |
T..SDEQNHL.IASVQLPNDDAQFDAS.H..SEK..FGG..SVSGKIEIEIKINH.G.V.R..YMPQNP. | |
Retrocopy | TCVSDEQNHLAIASVQLPNDDAQFDAS>H-NSEK-DFGGLLSVSGKIEIEIKINHKGDVSRTHYMPQNPY |
Parental | IIATKTPSSDVLVFDY-TKHPSKPDPSGECNPDLRLRGHQKEGYGLSWNPNLSGHLLSASDDHTICLWDI |
IIA.KTPSSDV..FDY..KHPSKP.PSGECN.DL.L.GHQKE.YGLSWNPNLSGHLLSASDDHTICLW.I | |
Retrocopy | IIARKTPSSDVHIFDY<QKHPSKPEPSGECNIDLCLCGHQKESYGLSWNPNLSGHLLSASDDHTICLWVI |
Parental | SAVPKEGKVVDAKTIFTGHTAV |
SA.P.EGKVVD.KTI.TGHTAV | |
Retrocopy | SAAPREGKVVDVKTILTGHTAV |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |