RetrogeneDB ID: | retro_etel_1877 | ||
Retrocopylocation | Organism: | Lesser hedgehog tenrec (Echinops telfairi) | |
Coordinates: | scaffold_310453:35754..36404(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RBBP4 | ||
Ensembl ID: | ENSETEG00000020008 | ||
Aliases: | None | ||
Description: | retinoblastoma binding protein 4 [Source:HGNC Symbol;Acc:9887] |
Percent Identity: | 74.34 % |
Parental protein coverage: | 51.53 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 7 |
Parental | MADKEAAFDDAVEERVINEEYKIWKKNTPFLYDLVMT-HALEWPSLTAQWLPDVTRPEGK-DFSIHRLVL |
..DKEAAFDDAVEE.VINEE.KIWK.N.PFL...VMT.HALEWPSL.AQWLPDV.RPEGK.D.SIH..VL | |
Retrocopy | VTDKEAAFDDAVEEHVINEEHKIWKRNPPFLHSVVMT<HALEWPSLAAQWLPDVSRPEGK<DVSIHPRVL |
Parental | GTHTSDEQNHL-VIASVQLPNDDAQFDASHYDSEKGEFGGFGSVSGKIEIEIKI-NHEGEVNRA-RYMPQ |
GTH..DEQNHL.V..SVQ.P.D.AQFDASH.D.EKGEFGG.GSV.GKIE.EIKI...E.EVNRA.RY..Q | |
Retrocopy | GTHLLDEQNHL<VTTSVQPPDDGAQFDASH*DGEKGEFGGLGSVGGKIELEIKI<HREREVNRA<RYTSQ |
Parental | NPCIIATKTPSSDVLVFDYTKHPSKPDPSGECNPDLRLRGHQKEGYGL-SWNPNLSGHLLSASDDHTICL |
.PCI.A.KTP...VL.FDYT.HPS.PDPS.EC.PD..LRGHQKEGY.L.SWNPNLSG..L.A.DDHTICL | |
Retrocopy | DPCIVASKTPFGEVLGFDYTEHPSTPDPSAECKPDVPLRGHQKEGYRL<SWNPNLSGQWLRALDDHTICL |
Parental | W-DISAVPKEGKVVDA |
W.DISAV.KEG.VVDA | |
Retrocopy | W<DISAVAKEGSVVDA |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |