RetrogeneDB ID: | retro_chof_1382 | ||
Retrocopylocation | Organism: | Sloth (Choloepus hoffmanni) | |
Coordinates: | scaffold_277426:517..1445(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RBBP4 | ||
Ensembl ID: | ENSCHOG00000004066 | ||
Aliases: | None | ||
Description: | retinoblastoma binding protein 4 [Source:HGNC Symbol;Acc:9887] |
Percent Identity: | 91.29 % |
Parental protein coverage: | 72.64 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 1 |
Parental | EIEIKINHEGEVNRARYMPQNPCIIATKTPSSDVLVFDYTKHPSKPDPSGECNPDLRLRGHQKEGYGLSW |
.IEIKINHEGEVNRA.YMPQNPCIIATKTPSSDVLVF.Y.KHPSK.DPSGECNPDLRL.GHQ.EGYGLSW | |
Retrocopy | KIEIKINHEGEVNRAHYMPQNPCIIATKTPSSDVLVFYYMKHPSKQDPSGECNPDLRLCGHQEEGYGLSW |
Parental | NPNLSGHLLSASDDHTICLWDISAVPKEGKVVDAKTIFTGHTAVVEDVSWHLLHESLFGSVADDQKLMIW |
NPNLSGHLLSASDDHT.CLWDISA.PKEGKVVD.KTIFTGHTAVVEDVSW.LLHESLFGSVADDQKLM.. | |
Retrocopy | NPNLSGHLLSASDDHTVCLWDISAIPKEGKVVDSKTIFTGHTAVVEDVSWYLLHESLFGSVADDQKLMMG |
Parental | DTRSNNTSKPSHSVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQ-QW |
D..SNNTSKPSHS.DAHTAE.NCLSF.PYSEFILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQ.QW | |
Retrocopy | DSDSNNTSKPSHSADAHTAEMNCLSFSPYSEFILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQW |
Parental | SPHNETILASSGMDRRLNVWDLSKIGEEQS-PEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWVICSVS |
SP.NETILASSGMDRRLNVWDLSKIGEEQS..EDAEDGPPELLFIHGGHTAKISDFSWNPNE.WVICSVS | |
Retrocopy | SPQNETILASSGMDRRLNVWDLSKIGEEQS>QEDAEDGPPELLFIHGGHTAKISDFSWNPNETWVICSVS |
Parental | EDNIMQVWQMAENIYNDEDPEGSVDPEGQG |
ED.IMQVWQ.AENIYNDEDP..SVDPEGQG | |
Retrocopy | EDDIMQVWQTAENIYNDEDPDRSVDPEGQG |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |