Parental gene: | RBBP4, ENSCHOG00000004066 |
| Aliases: | None |
| Description: | retinoblastoma binding protein 4 [Source:HGNC Symbol;Acc:9887] |
| Organism: | Sloth (Choloepus hoffmanni) |
| Coordinates: | GeneScaffold_5259:29303..43335(+) |
>ENSCHOG00000004066
ATGGCCGACAAGGAAGCAGCCTTTGATGACGCAGTGGAAGAACGTGTGATCAACGAGGAGTACAAAATATGGAAAAAGAA
CACTCCTTTTCTTTATGATTTGGTCATGACCCATGCTCTGGAGTGGCCCAGCCTCACTGCACAGTGGCTTCCAGATGTAA
CCAGACCAGAAGGAAAAGATTTCAGCATTCATCGACTTGTCCTGGGGACACACACTTCAGATGAACAAAACCACCTTGTA
ATAGCCAGTGTGCAGCTCCCTAATGATGATGCTCAGTTTGATGCATCACACTACGACAGTGAGAAAGGAGAATTTGGAGG
TTTTGGCTCAGTTAGTGGAAAAATTGAAATAGAAATCAAGATCAACCATGAAGGAGAAGTGAACAGGGCCCGTTATATGC
CCCAGAACCCTTGCATCATTGCAACAAAGACTCCATCCAGTGATGTTCTTGTTTTTGACTACACGAAACACCCTTCTAAA
CCAGACCCTTCTGGAGAGTGCAACCCAGACTTGCGTCTCCGTGGACATCAGAAAGAAGGCTATGGGCTTTCTTGGAACCC
AAATCTCAGCGGGCACTTACTTAGTGCTTCAGATGACCATACCATCTGCTTATGGGACATCAGTGCCGTTCCAAAGGAAG
GAAAAGTGGTAGATGCGAAGACCATCTTTACAGGGCACACAGCTGTAGTAGAGGATGTTTCCTGGCATCTACTCCATGAG
TCTCTGTTTGGGTCAGTTGCTGATGATCAGAAGCTTATGATCTGGGATACTCGTTCAAACAATACTTCCAAACCAAGCCA
CTCAGTTGATGCTCACACTGCTGAAGTGAACTGCCTCTCTTTCAATCCTTACAGTGAGTTCATTCTTGCCACAGGATCAG
CTGACAAGACTGTTGCCTTGTGGGATCTGAGAAATCTGAAACTCAAGTTGCATTCCTTTGAGTCACATAAGGATGAAATA
TTCCAGCAGTGGTCACCGCACAATGAAACTATTTTGGCTTCCAGTGGCATGGATCGTAGACTGAATGTCTGGGATTTAAG
TAAAATTGGAGAGGAACAATCGCCAGAAGATGCAGAAGATGGGCCACCAGAGTTGTTGTTTATTCATGGTGGTCACACTG
CCAAGATATCTGATTTCTCTTGGAATCCCAATGAACCTTGGGTGATTTGTTCTGTATCAGAAGACAATATCATGCAAGTG
TGGCAGATGGCAGAGAACATTTATAATGATGAAGACCCTGAAGGAAGTGTGGATCCAGAAGGACAAGGATCCTAG
ATGGCCGACAAGGAAGCAGCCTTTGATGACGCAGTGGAAGAACGTGTGATCAACGAGGAGTACAAAATATGGAAAAAGAA
CACTCCTTTTCTTTATGATTTGGTCATGACCCATGCTCTGGAGTGGCCCAGCCTCACTGCACAGTGGCTTCCAGATGTAA
CCAGACCAGAAGGAAAAGATTTCAGCATTCATCGACTTGTCCTGGGGACACACACTTCAGATGAACAAAACCACCTTGTA
ATAGCCAGTGTGCAGCTCCCTAATGATGATGCTCAGTTTGATGCATCACACTACGACAGTGAGAAAGGAGAATTTGGAGG
TTTTGGCTCAGTTAGTGGAAAAATTGAAATAGAAATCAAGATCAACCATGAAGGAGAAGTGAACAGGGCCCGTTATATGC
CCCAGAACCCTTGCATCATTGCAACAAAGACTCCATCCAGTGATGTTCTTGTTTTTGACTACACGAAACACCCTTCTAAA
CCAGACCCTTCTGGAGAGTGCAACCCAGACTTGCGTCTCCGTGGACATCAGAAAGAAGGCTATGGGCTTTCTTGGAACCC
AAATCTCAGCGGGCACTTACTTAGTGCTTCAGATGACCATACCATCTGCTTATGGGACATCAGTGCCGTTCCAAAGGAAG
GAAAAGTGGTAGATGCGAAGACCATCTTTACAGGGCACACAGCTGTAGTAGAGGATGTTTCCTGGCATCTACTCCATGAG
TCTCTGTTTGGGTCAGTTGCTGATGATCAGAAGCTTATGATCTGGGATACTCGTTCAAACAATACTTCCAAACCAAGCCA
CTCAGTTGATGCTCACACTGCTGAAGTGAACTGCCTCTCTTTCAATCCTTACAGTGAGTTCATTCTTGCCACAGGATCAG
CTGACAAGACTGTTGCCTTGTGGGATCTGAGAAATCTGAAACTCAAGTTGCATTCCTTTGAGTCACATAAGGATGAAATA
TTCCAGCAGTGGTCACCGCACAATGAAACTATTTTGGCTTCCAGTGGCATGGATCGTAGACTGAATGTCTGGGATTTAAG
TAAAATTGGAGAGGAACAATCGCCAGAAGATGCAGAAGATGGGCCACCAGAGTTGTTGTTTATTCATGGTGGTCACACTG
CCAAGATATCTGATTTCTCTTGGAATCCCAATGAACCTTGGGTGATTTGTTCTGTATCAGAAGACAATATCATGCAAGTG
TGGCAGATGGCAGAGAACATTTATAATGATGAAGACCCTGAAGGAAGTGTGGATCCAGAAGGACAAGGATCCTAG
| Species | Parental gene accession | Homology type | Retrogenes number | |
|---|---|---|---|---|
| Bos taurus | ENSBTAG00000005904 | ortholog_one2one | 2 retrogenes | |
| Canis familiaris | ENSCAFG00000010527 | ortholog_one2one | 1 retrogene | |
| Callithrix jacchus | ENSCJAG00000001021 | ortholog_one2one | 7 retrogenes | |
| Cavia porcellus | ENSCPOG00000015352 | ortholog_one2one | 3 retrogenes | |
| Equus caballus | ENSECAG00000022784 | ortholog_one2one | 1 retrogene | |
| Echinops telfairi | ENSETEG00000020008 | ortholog_one2one | 4 retrogenes | |
| Felis catus | ENSFCAG00000027017 | ortholog_one2one | 1 retrogene | |
| Homo sapiens | ENSG00000162521 | ortholog_one2one | 6 retrogenes | |
| Macropus eugenii | ENSMEUG00000014379 | ortholog_one2one | 1 retrogene | |
| Myotis lucifugus | ENSMLUG00000000749 | ortholog_one2one | 2 retrogenes | |
| Macaca mulatta | ENSMMUG00000009940 | ortholog_one2one | 1 retrogene | |
| Mustela putorius furo | ENSMPUG00000015214 | ortholog_one2one | 1 retrogene | |
| Mus musculus | ENSMUSG00000057236 | ortholog_one2one | 1 retrogene | |
| Nomascus leucogenys | ENSNLEG00000002805 | ortholog_one2one | 6 retrogenes | |
| Petromyzon marinus | ENSPMAG00000007189 | ortholog_one2many | 1 retrogene | |
| Pongo abelii | ENSPPYG00000001588 | ortholog_one2one | 6 retrogenes | |
| Pteropus vampyrus | ENSPVAG00000010981 | ortholog_one2one | 2 retrogenes | |
| Rattus norvegicus | ENSRNOG00000021492 | ortholog_one2one | 1 retrogene | |
| Sarcophilus harrisii | ENSSHAG00000010923 | ortholog_one2one | 1 retrogene | |
| Ictidomys tridecemlineatus | ENSSTOG00000012011 | ortholog_one2one | 1 retrogene |
| # | RetrogeneDB ID | Identity (%) | Coverage (%) | ORF conservation | Expression evidence | RDV |
|---|---|---|---|---|---|---|
| 1. | retro_chof_908 | 81.03 | 54.01 | Please wait, loading  | Please wait, loading | Please wait, loading |
| 2. | retro_chof_1382 | 91.29 | 72.64 | Please wait, loading | Please wait, loading | Please wait, loading |
| 3. | retro_chof_1649 | 98.90 | 85.61 | Please wait, loading | Please wait, loading | Please wait, loading |
| 4. | retro_chof_1867 | 98.71 | 54.72 | Please wait, loading | Please wait, loading | Please wait, loading |
| 5. | retro_chof_2116 | 88.79 | 50.24 | Please wait, loading | Please wait, loading | Please wait, loading |
| 6. | retro_chof_2327 | 97.86 | 87.74 | Please wait, loading | Please wait, loading | Please wait, loading |
Download FASTA sequences of all ENSCHOG00000004066 retrocopies