Parental gene: | RBBP4, ENSG00000162521 |
| Aliases: | RBBP4, NURF55, RBAP48 |
| Description: | retinoblastoma binding protein 4 [Source:HGNC Symbol;Acc:9887] |
| Organism: | Human (Homo sapiens) |
| Coordinates: | 1:33116742..33151812(+) |
>ENSG00000162521
ATGGCCGACAAGGAAGCAGCCTTCGACGACGCAGTGGAAGAACGAGTGATCAACGAGGAATACAAAATATGGAAAAAGAA
CACCCCTTTTCTTTATGATTTGGTGATGACCCATGCTCTGGAGTGGCCCAGCCTAACTGCCCAGTGGCTTCCAGATGTAA
CCAGACCAGAAGGGAAAGATTTCAGCATTCATCGACTTGTCCTGGGGACACACACATCGGATGAACAAAACCATCTTGTT
ATAGCCAGTGTGCAGCTCCCTAATGATGATGCTCAGTTTGATGCGTCACACTACGACAGTGAGAAAGGAGAATTTGGAGG
TTTTGGTTCAGTTAGTGGAAAAATTGAAATAGAAATCAAGATCAACCATGAAGGAGAAGTAAACAGGGCCCGTTATATGC
CCCAGAACCCTTGTATCATCGCAACAAAGACTCCTTCCAGTGATGTTCTTGTTTTTGACTATACAAAACATCCTTCTAAA
CCAGATCCTTCTGGAGAGTGCAACCCAGACTTGCGTCTCCGTGGACATCAGAAGGAAGGCTATGGGCTTTCTTGGAACCC
AAATCTCAGTGGGCACTTACTTAGTGCTTCAGATGACCATACCATCTGCCTGTGGGACATCAGTGCCGTTCCAAAGGAGG
GAAAAGTGGTAGATGCGAAGACCATCTTTACAGGGCATACGGCAGTAGTAGAAGATGTTTCCTGGCATCTACTCCATGAG
TCTCTGTTTGGGTCAGTTGCTGATGATCAGAAACTTATGATTTGGGATACTCGTTCAAACAATACTTCCAAACCAAGCCA
CTCAGTTGATGCTCACACTGCTGAAGTGAACTGCCTTTCTTTCAATCCTTATAGTGAGTTCATTCTTGCCACAGGATCAG
CTGACAAGACTGTTGCCTTGTGGGATCTGAGAAATCTGAAACTTAAGTTGCATTCCTTTGAGTCACATAAGGATGAAATA
TTCCAGGTTCAGTGGTCACCTCACAATGAGACTATTTTAGCTTCCAGTGGTACTGATCGCAGACTGAATGTCTGGGATTT
AAGTAAAATTGGAGAGGAACAATCCCCAGAAGATGCAGAAGACGGGCCACCAGAGTTGTTGTTTATTCATGGTGGTCATA
CTGCCAAGATATCTGATTTCTCCTGGAATCCCAATGAACCTTGGGTGATTTGTTCTGTATCAGAAGACAATATCATGCAA
GTGTGGCAAATGGCAGAGAACATTTATAATGATGAAGACCCTGAAGGAAGCGTGGATCCAGAAGGACAAGGGTCCTAG
ATGGCCGACAAGGAAGCAGCCTTCGACGACGCAGTGGAAGAACGAGTGATCAACGAGGAATACAAAATATGGAAAAAGAA
CACCCCTTTTCTTTATGATTTGGTGATGACCCATGCTCTGGAGTGGCCCAGCCTAACTGCCCAGTGGCTTCCAGATGTAA
CCAGACCAGAAGGGAAAGATTTCAGCATTCATCGACTTGTCCTGGGGACACACACATCGGATGAACAAAACCATCTTGTT
ATAGCCAGTGTGCAGCTCCCTAATGATGATGCTCAGTTTGATGCGTCACACTACGACAGTGAGAAAGGAGAATTTGGAGG
TTTTGGTTCAGTTAGTGGAAAAATTGAAATAGAAATCAAGATCAACCATGAAGGAGAAGTAAACAGGGCCCGTTATATGC
CCCAGAACCCTTGTATCATCGCAACAAAGACTCCTTCCAGTGATGTTCTTGTTTTTGACTATACAAAACATCCTTCTAAA
CCAGATCCTTCTGGAGAGTGCAACCCAGACTTGCGTCTCCGTGGACATCAGAAGGAAGGCTATGGGCTTTCTTGGAACCC
AAATCTCAGTGGGCACTTACTTAGTGCTTCAGATGACCATACCATCTGCCTGTGGGACATCAGTGCCGTTCCAAAGGAGG
GAAAAGTGGTAGATGCGAAGACCATCTTTACAGGGCATACGGCAGTAGTAGAAGATGTTTCCTGGCATCTACTCCATGAG
TCTCTGTTTGGGTCAGTTGCTGATGATCAGAAACTTATGATTTGGGATACTCGTTCAAACAATACTTCCAAACCAAGCCA
CTCAGTTGATGCTCACACTGCTGAAGTGAACTGCCTTTCTTTCAATCCTTATAGTGAGTTCATTCTTGCCACAGGATCAG
CTGACAAGACTGTTGCCTTGTGGGATCTGAGAAATCTGAAACTTAAGTTGCATTCCTTTGAGTCACATAAGGATGAAATA
TTCCAGGTTCAGTGGTCACCTCACAATGAGACTATTTTAGCTTCCAGTGGTACTGATCGCAGACTGAATGTCTGGGATTT
AAGTAAAATTGGAGAGGAACAATCCCCAGAAGATGCAGAAGACGGGCCACCAGAGTTGTTGTTTATTCATGGTGGTCATA
CTGCCAAGATATCTGATTTCTCCTGGAATCCCAATGAACCTTGGGTGATTTGTTCTGTATCAGAAGACAATATCATGCAA
GTGTGGCAAATGGCAGAGAACATTTATAATGATGAAGACCCTGAAGGAAGCGTGGATCCAGAAGGACAAGGGTCCTAG
| Library | Parental gene expression (RPM) |
|---|---|
| bodymap2_liver | 36 .06 RPM |
| bodymap2_lung | 84 .88 RPM |
| bodymap2_breast | 83 .95 RPM |
| bodymap2_adipose | 91 .76 RPM |
| bodymap2_adrenal | 97 .54 RPM |
| bodymap2_skeletal_muscle | 66 .29 RPM |
| bodymap2_thyroid | 114 .14 RPM |
| bodymap2_prostate | 102 .43 RPM |
| bodymap2_colon | 80 .13 RPM |
| bodymap2_testis | 173 .60 RPM |
| bodymap2_brain | 113 .83 RPM |
| bodymap2_heart | 55 .03 RPM |
| bodymap2_white_blood_cells | 150 .67 RPM |
| bodymap2_lymph_node | 106 .13 RPM |
| bodymap2_ovary | 190 .32 RPM |
| bodymap2_kidney | 90 .89 RPM |
| Species | Parental gene accession | Homology type | Retrogenes number | |
|---|---|---|---|---|
| Bos taurus | ENSBTAG00000005904 | ortholog_one2one | 2 retrogenes | |
| Canis familiaris | ENSCAFG00000010527 | ortholog_one2one | 1 retrogene | |
| Choloepus hoffmanni | ENSCHOG00000004066 | ortholog_one2one | 6 retrogenes | |
| Callithrix jacchus | ENSCJAG00000001021 | ortholog_one2one | 7 retrogenes | |
| Cavia porcellus | ENSCPOG00000015352 | ortholog_one2one | 3 retrogenes | |
| Equus caballus | ENSECAG00000022784 | ortholog_one2one | 1 retrogene | |
| Echinops telfairi | ENSETEG00000020008 | ortholog_one2one | 4 retrogenes | |
| Felis catus | ENSFCAG00000027017 | ortholog_one2one | 1 retrogene | |
| Macropus eugenii | ENSMEUG00000014379 | ortholog_one2one | 1 retrogene | |
| Myotis lucifugus | ENSMLUG00000000749 | ortholog_one2one | 2 retrogenes | |
| Macaca mulatta | ENSMMUG00000009940 | ortholog_one2one | 1 retrogene | |
| Mustela putorius furo | ENSMPUG00000015214 | ortholog_one2one | 1 retrogene | |
| Mus musculus | ENSMUSG00000057236 | ortholog_one2one | 1 retrogene | |
| Nomascus leucogenys | ENSNLEG00000002805 | ortholog_one2one | 6 retrogenes | |
| Petromyzon marinus | ENSPMAG00000007189 | ortholog_one2many | 1 retrogene | |
| Pongo abelii | ENSPPYG00000001588 | ortholog_one2one | 6 retrogenes | |
| Pteropus vampyrus | ENSPVAG00000010981 | ortholog_one2one | 2 retrogenes | |
| Rattus norvegicus | ENSRNOG00000021492 | ortholog_one2one | 1 retrogene | |
| Sarcophilus harrisii | ENSSHAG00000010923 | ortholog_one2one | 1 retrogene | |
| Ictidomys tridecemlineatus | ENSSTOG00000012011 | ortholog_one2one | 1 retrogene |
| # | RetrogeneDB ID | Identity (%) | Coverage (%) | ORF conservation | Expression evidence | RDV |
|---|---|---|---|---|---|---|
| 1. | retro_hsap_1305 | 88.32 | 100.00 | Please wait, loading  | Please wait, loading | Please wait, loading |
| 2. | retro_hsap_2675 | 74.09 | 59.02 | Please wait, loading | Please wait, loading | Please wait, loading |
| 3. | retro_hsap_2814 | 87.67 | 51.65 | Please wait, loading | Please wait, loading | Please wait, loading |
| 4. | retro_hsap_3292 | 94.12 | 100.00 | Please wait, loading | Please wait, loading | Please wait, loading |
| 5. | retro_hsap_3600 | 88.09 | 67.32 | Please wait, loading | Please wait, loading | Please wait, loading |
| 6. | retro_hsap_3601 | 90.61 | 64.94 | Please wait, loading | Please wait, loading | Please wait, loading |
Download FASTA sequences of all ENSG00000162521 retrocopies