RetrogeneDB ID: | retro_etel_676 | ||
Retrocopylocation | Organism: | Lesser hedgehog tenrec (Echinops telfairi) | |
Coordinates: | scaffold_140736:708..1474(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RBBP4 | ||
Ensembl ID: | ENSETEG00000020008 | ||
Aliases: | None | ||
Description: | retinoblastoma binding protein 4 [Source:HGNC Symbol;Acc:9887] |
Percent Identity: | 87.11 % |
Parental protein coverage: | 60. % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 1 |
Parental | LRLRGHQKEGYGLSWNPNLSGHLLSASDDHTICLWDISAVPKEGKVVDAKTIFTGHTAVVEDVSW-HLLH |
..L.G.QKE.YG.S..PN.SGHL.SASDD..IC.W.IS...KEG..V.AKT..TGHTAVVED.SW.HLLH | |
Retrocopy | IHLLGYQKECYGIS*DPNHSGHLHSASDDCSICPWNISTTTKEGEEVNAKTLVTGHTAVVEDDSW>HLLH |
Parental | ESLFGSVADDQKLMIWDTRSNNTSKPSHSVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLK |
ESLFGSVADDQKLMIWDTRSNNTSKPSHSVDAHTAEVNCLSFNPYSEFILA..SADKTVAL.DLRNLKLK | |
Retrocopy | ESLFGSVADDQKLMIWDTRSNNTSKPSHSVDAHTAEVNCLSFNPYSEFILAKRSADKTVAL*DLRNLKLK |
Parental | LHSFESHKDEIFQVQWSPHNETILASSGTDRRLNVWDLSKIGEEQSPEDAEDGPPELLFIHGGHTAKISD |
LHSFESHKDEIFQVQWSPHNETILASSGTD.RLNVWDLSKI.EEQSPED.EDG.PELLFIHGGHTAKISD | |
Retrocopy | LHSFESHKDEIFQVQWSPHNETILASSGTDSRLNVWDLSKIREEQSPEDTEDGQPELLFIHGGHTAKISD |
Parental | FSWNPNEPWVICSVSEDNIMQVWQMAENIYNDEDPEGSVDPEGQGS |
FSWNPNEPWVICSVSEDNIMQVWQMAE.IYNDEDP.GSVDPEGQGS | |
Retrocopy | FSWNPNEPWVICSVSEDNIMQVWQMAESIYNDEDPLGSVDPEGQGS |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |