RetrogeneDB ID: | retro_pvam_902 | ||
Retrocopylocation | Organism: | Megabat (Pteropus vampyrus) | |
Coordinates: | scaffold_15860:19772..20603(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RBBP4 | ||
Ensembl ID: | ENSPVAG00000010981 | ||
Aliases: | None | ||
Description: | retinoblastoma binding protein 4 [Source:HGNC Symbol;Acc:9887] |
Percent Identity: | 71.93 % |
Parental protein coverage: | 65.88 % |
Number of stop codons detected: | 5 |
Number of frameshifts detected | 5 |
Parental | MADKEAAFDDAVEERVINEE-YKIWKKNTPFLYDLVMTHALEWPSLTAQWLPDVTRPEGKDFSIHRLVLG |
.ADKE..F....EE.V.NEE..KIW.KN.PF...LV.TH.L.WPSLT.QWLP.VT.PE.K.F.I.RL.LG | |
Retrocopy | LADKEVVFL*LSEEIVMNEE<IKIW*KNIPFFKNLVITHDLGWPSLTVQWLPEVT*PERKYFFINRLILG |
Parental | THTSDEQNHLVIASVQLPNDDAQFDASH-YDSEKGEFGGFGSV-SGKIEIEIKINHEGEVNRARYMPQNP |
THT.DEQN...IASV.LPN..AQF.ASH..DSEKGEFGGFG.V.SGK.EIEIK.NHEG..NRARYMPQNP | |
Retrocopy | THTLDEQNRFMIASV*LPNNYAQFNASH<HDSEKGEFGGFGLV<SGKTEIEIKTNHEGKANRARYMPQNP |
Parental | CIIAT-KTPSSDVLVFDYTKHPSKPDPSGECNPDLRLRGHQKEGYGLSW-NPNLSGHLLSASDDHTICLW |
CII...KT.SS..LVFDYTKHP.....SGE.NP.L.L.GH..EGYGLSW...NLS.HLLSASDDHTICLW | |
Retrocopy | CIIVA>KT-SSNILVFDYTKHPPTLYLSGEFNPGLHLHGHH*EGYGLSW<EENLSMHLLSASDDHTICLW |
Parental | DISAVPKEGKVVDAKTIFTGHTAVVEDVSWHLLHESLFGSVADDQKLMIWDTRSNNTSKPSHSVDAHTAE |
DI.AVPKEGK.V..KTIFTGH.AVV.D.SWHL.HESLFGSV.DDQ.L.IWDT.SNNT.KPSHSVDAHTAE | |
Retrocopy | DIGAVPKEGKAVNLKTIFTGHRAVV-DISWHLFHESLFGSVTDDQRLKIWDTHSNNTFKPSHSVDAHTAE |
Parental | VNCLS |
V...S | |
Retrocopy | VFIVS |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |