Parental gene:

Nsa2, ENSMUSG00000060739

Aliases:Nsa2, 5730427N09Rik, LNR42, Nsa2p, Tinp1, Yr29
Description:NSA2 ribosome biogenesis homolog (S. cerevisiae) [Source:MGI Symbol;Acc:MGI:1913883]
Organism:Mouse (Mus musculus)
Coordinates:13:97129426..97137926(-)


>ENSMUSG00000060739
ATGCCACAAAATGAATATATTGAATTGCACCGCAAACGATACGGATATCGTTTGGACTACCATGAGAAAAAGAGAAAGAA
AGAAGGTCGGGAGGCCCATGAACGTTCAAAGAAGGCAAAAAAAATGATTGGCCTGAAGGCTAAGCTCTACCATAAACAGC
GCCATGCCGAGAAAATACAAATGAAAAAGACTATTAAGATGCATGAGAAGAGAAACACCAAGCAGAAGGATGATGAGAAG
ACGCCGCAGGGAGCAGTCCCTGCCTATCTGCTGGACAGAGAGGGCCAGTCGAGAGCAAAAGTCCTTTCTAACATGATTAA
GCAGAAACGGAAAGAAAAGGCGGGAAAATGGGAGGTCCCTCTACCCAAAGTTCGTGCCCAAGGAGAAACAGAAGTATTGA
AAGTTATTCGGACAGGAAAAAGGAAAAAGAAGGCATGGAAGAGAATGGTTACTAAAGTCTGTTTTGTTGGCGATGGCTTT
ACAAGAAAACCACCGAAATATGAAAGGTTCATTAGGCCCATGGGTCTACGTTTCAAAAAAGCCCATGTCACACACCCTGA
GCTGAAAGCTACCTTTTGCCTGCCTATTCTCGGTGTGAAAAAGAATCCATCGTCCCCATTATATACAACCCTGGGTGTGA
TCACCAAAGGTACAGTTATTGAAGTGAATGTGAGCGAGCTGGGCCTTGTGACACAAGGAGGCAAGGTGATTTGGGGAAAG
TACGCCCAAGTTACCAACAATCCTGAGAACGATGGGTGCATAAATGCGGTCTTGCTGGTCTGA

Library Parental gene expression (RPM)
SRP007412_brain 10 .05 RPM
SRP007412_cerebellum 9 .99 RPM
SRP007412_heart 16 .09 RPM
SRP007412_kidney 22 .87 RPM
SRP007412_liver 19 .72 RPM
SRP007412_testis 25 .52 RPM



Species Parental gene accession Homology type Retrogenes number
Bos taurus ENSBTAG00000003066 ortholog_one2one 3 retrogenes
retro_btau_326, retro_btau_931, retro_btau_949,
Canis familiaris ENSCAFG00000008311 possible_ortholog 4 retrogenes
retro_cfam_1292, retro_cfam_361, retro_cfam_49, retro_cfam_64,
Callithrix jacchus ENSCJAG00000016874 possible_ortholog 1 retrogene
retro_cjac_116,
Equus caballus ENSECAG00000005528 ortholog_one2one 1 retrogene
retro_ecab_445,
Echinops telfairi ENSETEG00000004095 possible_ortholog 13 retrogenes
retro_etel_1086, retro_etel_1479, retro_etel_1786, retro_etel_2030, retro_etel_2112, retro_etel_2116, retro_etel_2197, retro_etel_359, retro_etel_613, retro_etel_729, retro_etel_890, retro_etel_940, retro_etel_988,
Felis catus ENSFCAG00000011978 possible_ortholog 1 retrogene
retro_fcat_98,
Loxodonta africana ENSLAFG00000009910 possible_ortholog 4 retrogenes
retro_lafr_253, retro_lafr_455, retro_lafr_620, retro_lafr_714,
Macropus eugenii ENSMEUG00000015798 possible_ortholog 3 retrogenes
retro_meug_1191, retro_meug_1408, retro_meug_161,
Myotis lucifugus ENSMLUG00000014464 ortholog_one2one 4 retrogenes
retro_mluc_1596, retro_mluc_1664, retro_mluc_757, retro_mluc_917,
Monodelphis domestica ENSMODG00000001900 possible_ortholog 4 retrogenes
retro_mdom_115, retro_mdom_1702, retro_mdom_581, retro_mdom_592,
Oryctolagus cuniculus ENSOCUG00000006536 possible_ortholog 6 retrogenes
retro_ocun_149, retro_ocun_1591, retro_ocun_1602, retro_ocun_306, retro_ocun_658, retro_ocun_76,
Pteropus vampyrus ENSPVAG00000005396 ortholog_one2one 2 retrogenes
retro_pvam_1352, retro_pvam_476,
Rattus norvegicus ENSRNOG00000016530 ortholog_one2one 15 retrogenes
retro_rnor_1074, retro_rnor_1317, retro_rnor_1366, retro_rnor_1921, retro_rnor_2630, retro_rnor_2745, retro_rnor_2767, retro_rnor_2817, retro_rnor_2820, retro_rnor_2852, retro_rnor_2877, retro_rnor_2964, retro_rnor_618, retro_rnor_945, retro_rnor_951,
Sorex araneus ENSSARG00000009424 possible_ortholog 4 retrogenes
retro_sara_555, retro_sara_589, retro_sara_620, retro_sara_703,
Sus scrofa ENSSSCG00000014075 ortholog_one2one 2 retrogenes
retro_sscr_287, retro_sscr_288,
Tupaia belangeri ENSTBEG00000012978 possible_ortholog 56 retrogenes
retro_tbel_1062, retro_tbel_1078, retro_tbel_1141, retro_tbel_1317, retro_tbel_1329, retro_tbel_1476, retro_tbel_152, retro_tbel_1548, retro_tbel_1569, retro_tbel_1627, retro_tbel_1733, retro_tbel_1762, retro_tbel_1778, retro_tbel_179, retro_tbel_1845, retro_tbel_1940, retro_tbel_2102, retro_tbel_2113, retro_tbel_2138, retro_tbel_2220, retro_tbel_229, retro_tbel_254, retro_tbel_2586, retro_tbel_2757, retro_tbel_2784, retro_tbel_3016, retro_tbel_3040, retro_tbel_3116, retro_tbel_3264, retro_tbel_3298, retro_tbel_3417, retro_tbel_3514, retro_tbel_3601, retro_tbel_3650, retro_tbel_3724, retro_tbel_3736, retro_tbel_3763, retro_tbel_3795, retro_tbel_4028, retro_tbel_406, retro_tbel_4104, retro_tbel_4169, retro_tbel_4270, retro_tbel_430, retro_tbel_4401, retro_tbel_4422, retro_tbel_4491, retro_tbel_4503, retro_tbel_4513, retro_tbel_4642, retro_tbel_4689, retro_tbel_535, retro_tbel_670, retro_tbel_721, retro_tbel_897, retro_tbel_91,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_mmus_402 73.21 84.23
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2. retro_mmus_518 93.18 83.85
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3. retro_mmus_674 96.12 79.23
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4. retro_mmus_690 90.49 100.00
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5. retro_mmus_890 87.72 65.38
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6. retro_mmus_1121 88.89 62.31
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7. retro_mmus_1329 93.58 83.85
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8. retro_mmus_1472 79.90 75.77
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9. retro_mmus_1558 81.37 100.00
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10. retro_mmus_1587 79.09 100.00
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11. retro_mmus_1751 85.52 83.85
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12. retro_mmus_1785 99.43 67.31
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13. retro_mmus_1819 95.77 100.00
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14. retro_mmus_1890 85.44 99.23
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15. retro_mmus_2426 76.92 73.08
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16. retro_mmus_2617 89.04 83.85
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17. retro_mmus_2706 88.02 73.46
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18. retro_mmus_2806 93.87 100.00
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19. retro_mmus_3105 75.49 77.31
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20. retro_mmus_3246 70.92 52.69
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21. retro_mmus_3302 85.71 58.08
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22. retro_mmus_3340 81.61 83.46
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23. retro_mmus_3485 87.08 80.00
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24. retro_mmus_3671 76.04 71.92
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25. retro_mmus_3713 96.17 100.00
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Download FASTA sequences of all ENSMUSG00000060739 retrocopies