RetrogeneDB ID: | retro_tbel_1733 | ||
Retrocopylocation | Organism: | Treeshrew (Tupaia belangeri) | |
Coordinates: | GeneScaffold_5581:485287..485676(-) | ||
Located in intron of: | ENSTBEG00000003808 | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | NSA2 | ||
Ensembl ID: | ENSTBEG00000012978 | ||
Aliases: | None | ||
Description: | NSA2 ribosome biogenesis homolog (S. cerevisiae) [Source:HGNC Symbol;Acc:30728] |
Percent Identity: | 79.55 % |
Parental protein coverage: | 50.78 % |
Number of stop codons detected: | 4 |
Number of frameshifts detected | 2 |
Parental | MPQNEYIELHRKRYGYRLDYHEKKRKKESREAHERSKKAKKMIGLKAKLYHKQRHAEKIQMKKTIKMHE- |
.P.N.YIELHRK.YGY.L.YHEKKRKKES.EAH..SK.A.KM..LKAKLYHKQRHAEKIQM.KTI.MHE. | |
Retrocopy | LPKNKYIELHRKCYGYCLGYHEKKRKKES*EAHKHSKRATKMTSLKAKLYHKQRHAEKIQMNKTI*MHE> |
Parental | KRNTKQKNDEKTPQGAVPAYLLDREGQSRAKVLSNMIKQKRKEKAGKWEVP-LPKVRAQGET |
KRNTKQKNDEKTPQGAVPAYLLDR.GQ..AKVLSNMIKQ.RKEK.GK..V..LPKV..QGET | |
Retrocopy | KRNTKQKNDEKTPQGAVPAYLLDR-GQFQAKVLSNMIKQRRKEKVGK*KVQ>LPKV*DQGET |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |