RetrogeneDB ID: | retro_rnor_2852 | ||
Retrocopylocation | Organism: | Rat (Rattus norvegicus) | |
Coordinates: | X:114246265..114246987(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | Nsa2 | ||
Ensembl ID: | ENSRNOG00000016530 | ||
Aliases: | Nsa2, Cdk105, Tinp1 | ||
Description: | ribosome biogenesis protein NSA2 homolog [Source:RefSeq peptide;Acc:NP_599242] |
Percent Identity: | 78.93 % |
Parental protein coverage: | 91.92 % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 2 |
Parental | EKKRKKEGREAH-ERSKKAKKMIGLKAKLYHKQRHAEKIQMKKTIKMHEKRNTKQKDDEKTPQGAVPAYL |
EK.RK..GR.....R.......IGLKAK.YHKQ.H.EKI.MKKTIKMHEKRNTK.KD.EKTPQGAVPAYL | |
Retrocopy | EKERKEVGRPMNVQRRXXXXXXIGLKAKVYHKQHHVEKI*MKKTIKMHEKRNTKPKDEEKTPQGAVPAYL |
Parental | LDREGQSRAKVLSNMIKQKRKEKAGKWEVPLPKVRAQGETEVLKVIRT-GKRKKKAWKRMVTKVCFVGDG |
L.REGQSRAKVL.NMIKQK..EKAGKWEVPLPK..AQGETEVLKVIRT......KAWKRMVT.VCFVGD. | |
Retrocopy | LHREGQSRAKVLPNMIKQKQREKAGKWEVPLPKICAQGETEVLKVIRT>XXXXXKAWKRMVTNVCFVGDS |
Parental | FTRKPPKYERFIRPMGLRF-KKAHVTHPELKATFCLPILGVKKNPSSPLYTTLGVITKGTVIEVNVSELG |
FTR.PPKYE..I.PMGL.F.KKAHV.HPELKATFCLPILGV.KNPSS.LYTTLGVIT.GT.IEVNVSELG | |
Retrocopy | FTRNPPKYESLIWPMGLCF>KKAHVPHPELKATFCLPILGV*KNPSSSLYTTLGVITRGTIIEVNVSELG |
Parental | LVTQGGKVIWGKYAQVTNNPENDGCINAVLLV |
.VTQGGKVIWGKY.QV.NNPENDGCIN..LLV | |
Retrocopy | PVTQGGKVIWGKYDQVANNPENDGCINELLLV |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .00 RPM | 21 .50 RPM |
SRP017611_kidney | 0 .00 RPM | 26 .94 RPM |
SRP017611_liver | 0 .00 RPM | 10 .15 RPM |