RetrogeneDB ID: | retro_rnor_618 | ||
Retrocopylocation | Organism: | Rat (Rattus norvegicus) | |
Coordinates: | 1:173661604..173662029(-) | ||
Located in intron of: | ENSRNOG00000020425 | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | Nsa2 | ||
Ensembl ID: | ENSRNOG00000016530 | ||
Aliases: | Nsa2, Cdk105, Tinp1 | ||
Description: | ribosome biogenesis protein NSA2 homolog [Source:RefSeq peptide;Acc:NP_599242] |
Percent Identity: | 86.01 % |
Parental protein coverage: | 54.62 % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 1 |
Parental | VPLPKVRAQGETEVLK-VIRTGKRKKKAWKRMVTKVCFVGDGFTRKPPKYERFIRPMGLRFKKAHVTHPE |
VPLPKV.AQGETEVLK..I.TGKRKKK.WKRMVTKVCFVGD.FTRKP.KY.RF.R.MGLRFKKAHVTHPE | |
Retrocopy | VPLPKVYAQGETEVLK<II*TGKRKKKVWKRMVTKVCFVGDDFTRKPSKYKRFFRSMGLRFKKAHVTHPE |
Parental | LKATFCLPILGVKKNPSSPLYTTLGVITKGTVIEVNVSELGLVTQGGKVIWGKYAQVTNNPENDGCINAV |
L.A.FCLPIL.VKK.PSSPL.TTLGVITKGTV.EVNVSELGL.T.G..VIWGKYAQVTNNPENDGCINAV | |
Retrocopy | LIAPFCLPILSVKKSPSSPLHTTLGVITKGTVTEVNVSELGLGT*GDNVIWGKYAQVTNNPENDGCINAV |
Parental | LLV |
LLV | |
Retrocopy | LLV |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .00 RPM | 21 .50 RPM |
SRP017611_kidney | 0 .00 RPM | 26 .94 RPM |
SRP017611_liver | 0 .00 RPM | 10 .15 RPM |