RetrogeneDB ID: | retro_etel_1086 | ||
Retrocopylocation | Organism: | Lesser hedgehog tenrec (Echinops telfairi) | |
Coordinates: | scaffold_209199:3664..4400(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | NSA2 | ||
Ensembl ID: | ENSETEG00000004095 | ||
Aliases: | None | ||
Description: | NSA2 ribosome biogenesis homolog (S. cerevisiae) [Source:HGNC Symbol;Acc:30728] |
Percent Identity: | 86.35 % |
Parental protein coverage: | 94.23 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 3 |
Parental | MPQNEHIELHR-KRYGYRLDYHERKRKKESREAHERSKKAKKMIGLKAKLYHKQRHAEKIQMKKTIKMHE |
MPQ.EH.ELHR..R.GYRLDYHERKRKKES.EAH..SKKAKKMIGLKAKLYHKQRHAEKIQMKKTIKM.E | |
Retrocopy | MPQTEHSELHR<QRSGYRLDYHERKRKKESQEAHGCSKKAKKMIGLKAKLYHKQRHAEKIQMKKTIKMRE |
Parental | KRNTKQKNDEKTPQGAVPAYLLDREGQSRAKVLSNMIKQ-KRKEKAGKWEVPLPKVRAQGETEVLKVIRT |
KRNTKQKNDEK...G.V.A.LLDREGQSRAKVLSN.IKQ.KRKEKAGKWEVPLPKVRAQGETEVLKVIRT | |
Retrocopy | KRNTKQKNDEKASEGTVSASLLDREGQSRAKVLSNRIKQ>KRKEKAGKWEVPLPKVRAQGETEVLKVIRT |
Parental | GKRKKKAWKRMVTKVCFVGDGFTRKPPKYERFIXXXGLRFKKAHVTHPELKATFCLPILGVKKN-PSSP- |
GKR.KKAWKRM.T.VCFVGD.FT.KPPKYE.FI...GLRFKKA.VTHPELKATFCLPILGVKKN.P..P. | |
Retrocopy | GKR-KKAWKRMATRVCFVGDDFTQKPPKYEQFIRPMGLRFKKAPVTHPELKATFCLPILGVKKNQPFVP> |
Parental | LYTTLGVITKGTVIEVNVSELGLVTQGGKVIWGKYAQVT |
LYTTLGVITKGTVIEVNVSELGLVTQGGK.IWGK..QVT | |
Retrocopy | LYTTLGVITKGTVIEVNVSELGLVTQGGKAIWGKHGQVT |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |