RetrogeneDB ID: | retro_etel_2112 | ||
Retrocopylocation | Organism: | Lesser hedgehog tenrec (Echinops telfairi) | |
Coordinates: | scaffold_63700:485..1264(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSETEG00000015377 | |
Aliases: | None | ||
Status: | KNOWN_PSEUDOGENE | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | NSA2 | ||
Ensembl ID: | ENSETEG00000004095 | ||
Aliases: | None | ||
Description: | NSA2 ribosome biogenesis homolog (S. cerevisiae) [Source:HGNC Symbol;Acc:30728] |
Percent Identity: | 92.34 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 1 |
Parental | MPQNEHIELHRKRYGYRLDYHERKRKKESREAHERSKKAKKMIGLKAKLYHKQRHAEKIQMKKTIKMHEK |
MPQ.EH.ELH.KR.GY.LDY.ERKRKKESREAHERSKKAKKMIGLKAKLYHKQR.AEKIQ.KKTIKMHEK | |
Retrocopy | MPQTEHSELHHKRSGYCLDYPERKRKKESREAHERSKKAKKMIGLKAKLYHKQRQAEKIQTKKTIKMHEK |
Parental | RNTKQKNDEKTPQGAVPAYLLDREGQSRAKVLSNMIKQKRKEKAGKWEVPLPKVRAQGETEVLKVIRTGK |
RNTK.KNDEKTPQGA.PA.LLDREGQS.AKVLSN.IKQKRKEKAGKWEVPLPKVRAQGETEVLKVIRTGK | |
Retrocopy | RNTK*KNDEKTPQGAGPASLLDREGQSQAKVLSNRIKQKRKEKAGKWEVPLPKVRAQGETEVLKVIRTGK |
Parental | RKKKAWKRMV-TKVCFVGDGFTRKPPKYERFIXXXGLRFKKAHVTHPELKATFCLPILGVKKNPSSPLYT |
RKKKAWKRMV.TKVCFVGDGFTRKPPKYERFI...GLRF.KA.VTHPELKATFCLPILGVKKNPSSPLYT | |
Retrocopy | RKKKAWKRMV<TKVCFVGDGFTRKPPKYERFIRPMGLRFTKAPVTHPELKATFCLPILGVKKNPSSPLYT |
Parental | TLGVITKGTVIEVNVSELGLVTQGGKVIWGKYAQVTNNPENDGCINAVLLV |
TLGVITKGT.IEVNVSELGLVTQGGKVIWGKYAQVTNNPENDGCINAVLLV | |
Retrocopy | TLGVITKGTAIEVNVSELGLVTQGGKVIWGKYAQVTNNPENDGCINAVLLV |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |