RetrogeneDB ID: | retro_etel_2116 | ||
Retrocopylocation | Organism: | Lesser hedgehog tenrec (Echinops telfairi) | |
Coordinates: | scaffold_65199:1008..1538(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSETEG00000005945 | |
Aliases: | None | ||
Status: | KNOWN_PSEUDOGENE | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | NSA2 | ||
Ensembl ID: | ENSETEG00000004095 | ||
Aliases: | None | ||
Description: | NSA2 ribosome biogenesis homolog (S. cerevisiae) [Source:HGNC Symbol;Acc:30728] |
Percent Identity: | 66.49 % |
Parental protein coverage: | 69.23 % |
Number of stop codons detected: | 4 |
Number of frameshifts detected | 8 |
Parental | LHRKRYGYRLD-YHERKRKKESREAHERSKKAKK-MIGLKAKLYHKQRHAEKIQMK-KTIKMHEKRNTKQ |
LH.KRYG...D.YHE...KKE...AHERSK.AK..MIG.K.K.YHKQR.AEKI..K.KTIKM.EKRN.KQ | |
Retrocopy | LHHKRYGCLSD<YHEKR*KKEN*KAHERSKMAKI>MIGVKTKPYHKQRYAEKIPKK<KTIKMLEKRNPKQ |
Parental | KNDEKTPQ-GAVPAYLLDREGQSRAKVLSNMIKQKRKEKAGKWEVPLPKVRAQ-GETEVLKVIR-TGKRK |
KNDEK.P..GAVPAYLLDREGQS.A.VLS..I....KEK.GK.E.PL.KV.A...E.EV..VIR.TG.RK | |
Retrocopy | KNDEKMPP>GAVPAYLLDREGQSHAEVLSIVI--QLKEKTGK*EFPLRKVCAR<VEPEVIQVIR<TGTRK |
Parental | KKAWKRMVTKVCFVGDG-FTRKPPKYERFIXXXGLRFKKAHV-THPEL |
KK...RMVTKVCFVG....T.KPPK.ERF....G.RFKKAHV..HPEL | |
Retrocopy | KKP*RRMVTKVCFVGHS<LTWKPPKCERFVRPMGIRFKKAHV<MHPEL |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |