RetrogeneDB ID: | retro_cfam_361 | ||
Retrocopylocation | Organism: | Dog (Canis familiaris) | |
Coordinates: | 10:47619003..47619437(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | None | ||
Ensembl ID: | ENSCAFG00000008311 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 72.19 % |
Parental protein coverage: | 57.92 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 1 |
Parental | KEKAGKWEVPLPKVRAQGETEVLKVIRTGKRKKKAWKRMVTKVCFVGDGFTRKPPKYERFIRPMGLRFKK |
KEKAGKWEVP.PKVRAQ.E.E.LKVI.T.KRK.KAW.RMVTKVCF.G.GFT.KPPK.ERFIRPMGL..KK | |
Retrocopy | KEKAGKWEVPFPKVRAQEEREILKVIQTRKRKNKAWQRMVTKVCFAGNGFTGKPPKDERFIRPMGLHCKK |
Parental | AHVTHPELKATFCLPILGVKKNPSSPLYTTLGVITKGTVIEVNVSELGLVTQGGKVIWGKYAQV-TNNPE |
A.VT..ELK.TFC.PILGVK.NP...LYTTLG.ITKG..IE..VSELGLVT..G.....KYAQ..TN.PE | |
Retrocopy | APVTYSELKTTFCMPILGVKTNPAPLLYTTLGIITKGIIIEMKVSELGLVT*FGE----KYAQI<TNDPE |
Parental | NDGCINAVLLV |
.DG...AVLLV | |
Retrocopy | SDGG-KAVLLV |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP012049_cerebellum | 0 .04 RPM | 6 .01 RPM |
SRP017611_brain | 0 .00 RPM | 2 .86 RPM |
SRP017611_kidney | 0 .07 RPM | 18 .23 RPM |
SRP017611_liver | 0 .22 RPM | 5 .73 RPM |