RetrogeneDB ID: | retro_etel_2030 | ||
Retrocopylocation | Organism: | Lesser hedgehog tenrec (Echinops telfairi) | |
Coordinates: | scaffold_36565:2810..3586(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | NSA2 | ||
Ensembl ID: | ENSETEG00000004095 | ||
Aliases: | None | ||
Description: | NSA2 ribosome biogenesis homolog (S. cerevisiae) [Source:HGNC Symbol;Acc:30728] |
Percent Identity: | 64.04 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 3 |
Number of frameshifts detected | 4 |
Parental | MPQNEHIELHRKRYGYRLDYHERKRKKESREAHERSKKAKKMIGLKAKLYHKQRHAEKIQMKKTIKMHEK |
.PQN.H.E.HRKR.G.RL.Y.ERKR.KES.EAHERSKKA.KMIGLKAKLYH.Q....K....K......K | |
Retrocopy | IPQNKHMESHRKRHGHRLAYQERKR*KESQEAHERSKKAEKMIGLKAKLYHRQLRKYK---QKRLSKCMK |
Parental | RNTKQKNDEKTPQGAVPAYLLDREGQSRAKVLSNMIKQKRKEKAGKWEVPLPKVRAQGETEVLKVIRTGK |
R.T..KNDEKTPQGAVPA.LL.REGQSRAKVLSNMIK..R.EKAGK.EVPLPKV.AQG.TE.L.VIRTGK | |
Retrocopy | RGTPNKNDEKTPQGAVPASLLHREGQSRAKVLSNMIKRNRNEKAGKVEVPLPKVHAQGVTETLNVIRTGK |
Parental | RKKKAWKRMVTKVCFVGDGF-TRKPPKYERFIXXXGLRFKKAHVT-HPELKATFCLPILGVKKNPSS-PL |
RKK....RMVTKVC..G.G..TRKPP.........GL.F.......HPE.KATFC.P..G.K.NPSS.P. | |
Retrocopy | RKKETGNRMVTKVCLRGEGSSTRKPPN*MTH*PTSGLTFQEGTCSLHPEHKATFCFPMRGGKQNPSS<PT |
Parental | YTTLGVIT-KGTVIEVNVSELGLVT-QGGKVIW-GKYAQVTNNPEN-DGCINAVLLV |
....G.....GTVIE..VSELGLVT.QGG.V.W.GK.AQV.N.PEN..G...AVLLV | |
Retrocopy | VHNVGCCSQRGTVIEGSVSELGLVT<QGGPVLW<GKCAQVPNTPEN<HGPTEAVLLV |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |