RetrogeneDB ID: | retro_ocun_149 | ||
Retrocopylocation | Organism: | Rabbit (Oryctolagus cuniculus) | |
Coordinates: | 9:37087511..37088291(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSOCUG00000023616 | |
Aliases: | None | ||
Status: | KNOWN_PROTEIN_CODING | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | None | ||
Ensembl ID: | ENSOCUG00000006536 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 96.44 % |
Parental protein coverage: | 97.31 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | LHRKRYGYRLDYHEKKRKKESREAHERSKKAKKMIGLKAKLYHKQRHAEKIQMKKTIKMHEKRNTKQKND |
LHRKRYG..LDYHEKKRKKES.EAHE.SKKAKKMIGLKAKLYHKQRHAEKIQMKKTIKMHE.RNTKQKND | |
Retrocopy | LHRKRYGCSLDYHEKKRKKESGEAHEHSKKAKKMIGLKAKLYHKQRHAEKIQMKKTIKMHE-RNTKQKND |
Parental | EKTPKGAVPAYLLDREGQSRAKVLSNMIKQKRKEKAGKWEVPLPKVRAQGETEVLKVIRTGKRKKKAWKR |
EKTPKGAVPAYLLDREGQSRAKVLSNMIKQKRKEKAGKWEVPLPKV.AQGETEVLKVIRTGKRKKKAWKR | |
Retrocopy | EKTPKGAVPAYLLDREGQSRAKVLSNMIKQKRKEKAGKWEVPLPKVCAQGETEVLKVIRTGKRKKKAWKR |
Parental | MVTKVCFVGDGFTRKPPKYERFIRPMGLRFKKAHVTHPELKATFCLPILGVKKNPSSPLYTTLGVITKGT |
MVTKVCFVGDGFTRKPPKYERFIRPMGLRFKKAHVTHPELKATFCLPILGVKKN.SSPLYT.LGVITKGT | |
Retrocopy | MVTKVCFVGDGFTRKPPKYERFIRPMGLRFKKAHVTHPELKATFCLPILGVKKNLSSPLYTALGVITKGT |
Parental | VIEVNVSELGLVTQGGKVIWGKKYAQVTNNPENDGCINAVLLV |
VIEVNVSELGLVTQGGKVIWG.KYAQVTNNPENDGCINAVLLV | |
Retrocopy | VIEVNVSELGLVTQGGKVIWG-KYAQVTNNPENDGCINAVLLV |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .06 RPM | 7 .73 RPM |
SRP017611_kidney | 0 .00 RPM | 7 .60 RPM |
SRP017611_liver | 0 .00 RPM | 2 .62 RPM |