RetrogeneDB ID: | retro_etel_729 | ||
Retrocopylocation | Organism: | Lesser hedgehog tenrec (Echinops telfairi) | |
Coordinates: | scaffold_156082:2875..3518(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | NSA2 | ||
Ensembl ID: | ENSETEG00000004095 | ||
Aliases: | None | ||
Description: | NSA2 ribosome biogenesis homolog (S. cerevisiae) [Source:HGNC Symbol;Acc:30728] |
Percent Identity: | 50.68 % |
Parental protein coverage: | 84.23 % |
Number of stop codons detected: | 8 |
Number of frameshifts detected | 2 |
Parental | LHRKRYGYRLDYHERKRKKESREAHERSKKAKKMIGLKAKLYHKQRHAEKIQMKKTIKMHEKRNTKQKND |
LH.K.YG.RL.YHERKRK.ES.EA.E.S.K.KKM..LKAKLY.KQ.H.EK.QMKK.IK.HEK.NT.QKND | |
Retrocopy | LHLKLYGQRLHYHERKRK-ESGEAQEHSHKTKKMVVLKAKLYRKQPHSEKTQMKKIIKIHEKQNTTQKND |
Parental | EKTPQGAVPAYLLDREGQSRAKVLSNMIKQKRKEKAGKWEVPLPKVRAQGETEVLKVIRTGKRKKKAWKR |
EK.PQGA.P...LDREGQSRA....N..K.KRK...GK.....P.....G.....K.......K....K. | |
Retrocopy | EKAPQGALPGNRLDREGQSRAQR*VNKNK-KRK*ENGKYF--CPQAMPRGKLGY*KLFE*ERGKRR*GKQ |
Parental | MVTKVCFVGDGFTR-KPPKYERFIXXXGLRFKKAHVTHPELKATF-CLPILGVKKNPSSPLYTTLGVITK |
...K....G...T..KPPKY..F....GL.F..........K..F.CLP.L.VKK.P.SPL...LG.ITK | |
Retrocopy | *LLKSALFGLALTG<KPPKYK*FLRPMGLHFEGTRFAP*TYKPPF<CLPTLSVKKSPLSPLEKMLGIITK |
Parental | GTVIEVNVSEL |
.TV......EL | |
Retrocopy | STVSHRSECEL |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |