RetrogeneDB ID: | retro_tbel_4169 | ||
Retrocopylocation | Organism: | Treeshrew (Tupaia belangeri) | |
Coordinates: | scaffold_69815:1345..1864(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | NSA2 | ||
Ensembl ID: | ENSTBEG00000012978 | ||
Aliases: | None | ||
Description: | NSA2 ribosome biogenesis homolog (S. cerevisiae) [Source:HGNC Symbol;Acc:30728] |
Percent Identity: | 79.77 % |
Parental protein coverage: | 66.41 % |
Number of stop codons detected: | 4 |
Number of frameshifts detected | 0 |
Parental | MPQNEYIELHRKRYGYRLDYHEKKRKKESREAHERSKKAKKMIGLKAKLYHKQRHAEKIQMKKTIKMHEK |
MPQNEYIEL..KRYGY.LDYH.........EAHE.SKKAKKMIGLKAKLYHKQRHAE.IQMKKTIKMH.K | |
Retrocopy | MPQNEYIELYCKRYGYHLDYHXXXXXXXXQEAHEHSKKAKKMIGLKAKLYHKQRHAETIQMKKTIKMHAK |
Parental | RNTKQKNDEKTPQGAVPAYLLDREGQSRAKVLSNMIKQKRKEKAGKWEVPLPKVRAQGETEVLKVIRTGK |
RNTKQKNDEK.P.GAVPAYLLDREGQS..KVLSNMIKQK.KEKAGKW..PLPKV.A.GE.EVLKVI.TGK | |
Retrocopy | RNTKQKNDEKSP*GAVPAYLLDREGQS*VKVLSNMIKQKWKEKAGKWQGPLPKV*AEGEAEVLKVI*TGK |
Parental | REKAWKRMVTKVCF---GDFTKPPKYERFIRPM |
R.K.WKRMVTKVCF...G...K.PKYERFIRPM | |
Retrocopy | RKKTWKRMVTKVCFVGDGYTRKSPKYERFIRPM |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |