RetrogeneDB ID: | retro_sscr_198 | ||
Retrocopylocation | Organism: | Pig (Sus scrofa) | |
Coordinates: | 1:265172174..265172571(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RPL7L1 | ||
Ensembl ID: | ENSSSCG00000026472 | ||
Aliases: | None | ||
Description: | Sus scrofa ribosomal protein L7-like 1 (RPL7L1), mRNA. [Source:RefSeq mRNA;Acc:NM_001123192] |
Percent Identity: | 76.3 % |
Parental protein coverage: | 53.85 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 2 |
Parental | KIFSGVFMQVTPQTIKTLRIVEPYVTWGFPN-LKSVRELILKRGQAKVKNKIIPLTDNTVIEEHLGKFGV |
KIFSG.F.QVT.QT.K.L..VEP.VTWGFPN.LKSV.EL.LK.GQAKVK.KIIPLT.N.V.EE.LGKF.V | |
Retrocopy | KIFSGAFVQVTHQTVKMLLPVEPNVTWGFPN<LKSVGELFLKHGQAKVKYKIIPLTKNPVTEEDLGKFSV |
Parental | ICLEDLIHEIAFPGKNFQAISGFLRPFQLSVARHATKNRVGFLKEVGSPGYR-GERINQLIRQLN |
ICLEDLIH.IAF.GKNFQA.SGFL.PFQLSVA.HAT.NRVGFLK..GSPGY...E..NQLI.QLN | |
Retrocopy | ICLEDLIHQIAFLGKNFQAVSGFLCPFQLSVAGHATRNRVGFLKVMGSPGYE<DEQVNQLIQQLN |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP014902_placenta | 0 .00 RPM | 32 .92 RPM |
SRP014902_testis | 0 .00 RPM | 33 .52 RPM |
SRP018288_heart | 0 .00 RPM | 38 .22 RPM |
SRP018288_kidney | 0 .00 RPM | 54 .18 RPM |
SRP018288_liver | 0 .00 RPM | 55 .33 RPM |
SRP018288_lung | 0 .00 RPM | 38 .39 RPM |
SRP018856_adipose | 0 .00 RPM | 56 .16 RPM |
SRP035408_brain | 0 .00 RPM | 91 .03 RPM |
SRP035408_liver | 0 .00 RPM | 95 .35 RPM |