RetrogeneDB ID: | retro_sscr_756 | ||
Retrocopylocation | Organism: | Pig (Sus scrofa) | |
Coordinates: | 4:63511892..63512303(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RPL7L1 | ||
Ensembl ID: | ENSSSCG00000026472 | ||
Aliases: | None | ||
Description: | Sus scrofa ribosomal protein L7-like 1 (RPL7L1), mRNA. [Source:RefSeq mRNA;Acc:NM_001123192] |
Percent Identity: | 65. % |
Parental protein coverage: | 55.47 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 2 |
Parental | EEQRKKIPLVPENL-LKKRKAYQALKATQAKQALLQKKEQRKGKELKFKRLEWFLHDSW-RQLRDRVRLR |
EE..KKIP.VPENL.L.K............KQALLQKKEQRKGKE.KFK.LEWFL.DSW..QL.DRV..R | |
Retrocopy | EEPSKKIPFVPENL<LEKEEGLSS-PSPWGKQALLQKKEQRKGKEPKFK*LEWFLRDSW>GQLLDRVHFR |
Parental | RLEV-KPHGLEVPDKHSLAFVVRIERISGVSSVVQRTIARLRLKKIFSGVFMQVTPQTIKTLRIVEPYVT |
.L.V...HGLEVPDK.SLAFVV.I.RI.GVS..VQRT.A.L.L.K.FSGV.M.VTPQTIK.L..VEP... | |
Retrocopy | QLDVNQSHGLEVPDKYSLAFVVHIPRINGVSLLVQRTTAKLTLNKTFSGVLMKVTPQTIKMLHTVEPWIS |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP014902_placenta | 0 .00 RPM | 32 .92 RPM |
SRP014902_testis | 0 .00 RPM | 33 .52 RPM |
SRP018288_heart | 0 .00 RPM | 38 .22 RPM |
SRP018288_kidney | 0 .00 RPM | 54 .18 RPM |
SRP018288_liver | 0 .00 RPM | 55 .33 RPM |
SRP018288_lung | 0 .00 RPM | 38 .39 RPM |
SRP018856_adipose | 0 .00 RPM | 56 .16 RPM |
SRP035408_brain | 0 .00 RPM | 91 .03 RPM |
SRP035408_liver | 0 .00 RPM | 95 .35 RPM |